Pseudomonas sp. KG01, ACR52_RS06025 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.10.20.690 - - - 595 685 1.1E-25
Pfam PF01751 Toprim domain IPR006171 TOPRIM domain 422 533 4.3E-17
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 224 401 1.2E-65
FunFam G3DSA:3.40.50.670:FF:000005 DNA gyrase subunit B - - 394 594 9.3E-122
PRINTS PR00418 DNA topoisomerase II family signature - - 528 540 3.0E-71
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 5 223 1.1E-93
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 473 482 1.3E-75
PRINTS PR00418 DNA topoisomerase II family signature - - 423 437 3.0E-71
PRINTS PR00418 DNA topoisomerase II family signature - - 117 131 3.0E-71
FunFam G3DSA:3.30.230.10:FF:000005 DNA gyrase subunit B - - 223 395 9.5E-78
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 36 175 1.2E-21
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 9 221 2.23E-73
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 760 772 1.3E-75
PRINTS PR00418 DNA topoisomerase II family signature - - 508 525 3.0E-71
Pfam PF00204 DNA gyrase B IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 224 393 1.5E-55
FunFam G3DSA:3.40.50.670:FF:000004 DNA gyrase subunit B - - 707 806 6.7E-49
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 705 807 9.8E-29
SUPERFAMILY SSF56719 Type II DNA topoisomerase IPR013760 DNA topoisomerase, type IIA-like domain superfamily 397 797 8.11E-88
CDD cd03366 TOPRIM_TopoIIA_GyrB IPR034160 DNA gyrase subunit B, TOPRIM domain 421 535 3.48447E-77
NCBIfam TIGR01059 JCVI: DNA gyrase subunit B IPR011557 DNA gyrase, subunit B 9 806 0.0
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 315 331 1.3E-75
PANTHER PTHR45866 DNA GYRASE/TOPOISOMERASE SUBUNIT B - - 3 806 0.0
SMART SM00433 topII5 IPR001241 DNA topoisomerase, type IIA 39 800 0.0
Pfam PF00986 DNA gyrase B subunit, carboxyl terminus IPR002288 DNA gyrase B subunit, C-terminal 735 796 1.4E-30
Hamap MF_01898 DNA gyrase subunit B [gyrB]. IPR011557 DNA gyrase, subunit B 6 807 100.270218
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 199 212 1.3E-75
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 9 19 1.3E-75
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 35 179 1.8E-28
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 363 377 1.3E-75
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 377 397 1.3E-75
Pfam PF18053 DNA gyrase B subunit insert domain IPR041423 DNA gyrase subunit B insert domain 567 732 3.4E-52
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 223 245 1.3E-75
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 776 792 1.3E-75
CDD cd00822 TopoII_Trans_DNA_gyrase - - 223 380 2.43468E-73
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 224 395 5.5E-58
PRINTS PR00418 DNA topoisomerase II family signature - - 739 755 3.0E-71
PRINTS PR00418 DNA topoisomerase II family signature - - 490 506 3.0E-71
CDD cd16928 HATPase_GyrB-like - - 40 219 5.224E-104
PRINTS PR00418 DNA topoisomerase II family signature - - 74 87 3.0E-71
FunFam G3DSA:3.30.565.10:FF:000002 DNA gyrase subunit B - - 6 222 2.5E-94
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 184 199 1.3E-75
PRINTS PR00418 DNA topoisomerase II family signature - - 271 284 3.0E-71
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 402 589 1.0E-67
PRINTS PR00418 DNA topoisomerase II family signature - - 39 54 3.0E-71

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.