Pseudomonas sp. KG01, ACR52_RS22065
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_c29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCTATAACAAGAAGCGTGCCTGAAAGTACGAGGGCCAATGAAACAAAGGTCGGGGTGATGTGCGCACTGGTTTTTAATAAGTGGGTGTAAATTGGCGC TGCGTTTTTGGGGTTTAACTTGCGCATAAGTGTGCAATTAGTTGCCGTTGGTTTTTGAGCGTTTAGGCGTTAAGTCTTGCGGAGGGAGTGGGTTAGTTGT GGTGGCCAAACTGTGCAAAATGCTGCGCAGATGCTGTATTGCGGCGGTTGTAGGAAATTCCTTAAGTAGGATTTTGTTGCTTGCTGAATGTTTTTTGCAT GGCTACTGTTCAGGGGCTTCGGGAAGTTCACAACGAAGTTTCACCCGTACTCTGATGGGCAGTTAATGCAAAATTAGTGTGCGGGTTCTGTCTTGAACAG TCGTGCGCGGTCCACAATGGTTTACTCAGACACACTTTGCGTTTACTACCTTGAAATAGCACGCTCGCCTTGTTCAGGCGCAAGTTTTGCTGGCAGTGAT
|
|
| DNA Sequence for Gene |
>ACR52_RS22065
ATGCGCTTCTCCAGCGAATTTGAAGCTGTGGAAACCGAACTGGCCAAGGCGCAATCGATGCATGGCGGGAGCCAGCCGGATTGGCAAAAGGTCCGGGAAA TCAGCGAGTGTCTGTTGCGTCAGCACTCCAAGGATTTGCGGGTCGCCGTATGGTTGTCCTGGGCGTTGTACCAACGCGAATCCTTTCCTGGCTTGCTCGC GGGCCTGGGTTTGCTGAGTCATCTCTGTGAGCACCATTGGGCGGCTGTCCACCCCGCCAAATTGCGTACCCGTGGTGCGGCGTTCGGCTGGCTGGTGTTA CGCCTTGAGCAACTGTTTACGCAGAACTTGTCAATTGTCGATCAGCAGCCATTGTTTCAATCGATCCTTGAACACCTGTCTCGCCTCGATGATCGCTGGA GTGAATGCCTGGGAGATAACGCGCCGCTCTTGCTGCCGATTCGCAGGCAATTATCAGAGCGTCTGGAGCGTGCCGCGCAAAGCAGTCCTGAGCCTGCTGG TGTGACCGGCGTTATTACCCAGGTCAAACAGGTCGCCACGCAACTACTCAAGCCAGAGTCGGCAATCGACAACGAGAAGGACGCGCATAAACGTCTGCGT ACCTTGCAGGATCAGGCGCGCTCCTTGTGTACCTGGTGGCTGCGCCAGGACGCCACTGACCTGCGCGCGCTGCGCCTGAACCGAACATTGACATGGCTGC CGCTTGCGACTTACCCCGACGCCGACAGCGAAGGGGTCACCAGCCTGCGAGGCCCCACACCCGACAAGCTCAAGCGTTACCAGGAGCGTTTTGCCCAAGG GCATTACACCGACCTGATGCTGGAGCTTGAGGCGAGCCTGGCCGGTGCAATGTTCTGGTTCGACGGCTTGCGCATGGTCTGGGAGTGCCTTCAGGCCTTG CAGGCCAACCTGGCGATGACCGAACTGGAAGTGAGCTTTGCCCTGTTGTTGCAACGCCTGCCGAACCTGCCCGAATTCTGCTTTCACGGCGGTGCGCCTT TTGCCGATGCCGCGACCCGCGACTGGATCACGCTCCAGGTGGCTCGCCATCTGCAAAAAAACGAGCCGCTTAATGTGCCGGTCGATACCGATGCCGAGCC ATGGGAGACAGCATTACAGGATGTCATGCCAAGGTTGCGCCAGGACGGGCTGAAGGCCGCGGTAGGGGAAATCAAGCAAGGCCTGCATGCCGCACGCAGT GAGCGCGCCCGTTTTCATTGGCGATTGGCGCTGGCCCGGTTGTGTGTACTGGCAGGCAAGCATGAGTTGGCGAAGATTCAGCTCGAACACCTGGATCACG AACTGCAGCACGCAGGGCTGGACCGTTGGGAACCAGCGTTGGCGCTTCAAGTGACGCAGCTTCTGTACCGCTGTTGCGACTTGCTGCCCCAAAGCCAAGC GGTACGTGAACGCAAGGAACATACCCACCGCAGGTTGTGCCACTTCGATCTGGAAGCGGTACTTGAATAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTTTCGAGCCGCTCGAAAAAGGAGAAAAACCATGGCCAAAGAAGGTTCGGTAGCACCGAAGGAACGCATCAATATCACCTTCAAACCTGCTGTCGGGGG CGCCCAGGAAGAGGTTGAACTGCCATTGAAGTTACTGGTGCTGGGAGACTTCACCCTGCGTGAGGACCTTCGCAAGCTTGAAGACCGCAAGCCAATTGGT ATCGACAAGAACAGCCTGGATGAGGTGCTGGCCAAGCAAGCGTTGAGCCTGACGCTCAGCGTACCCAATCGCCTTCAGGACGAACCTTGCGTTGAAGAGC TGGGCATACAGGTCCGGATTAATTCGATGCAGGACTTCAACCCCGCAAGCCTGGTCGAGCAGATTCCCGAATTGAAGAAGCTGATGACATTGCGTGAAGC ACTGATGGCGCTCAAGGGACCACTGGGTAACACACCGAGCTTTCGCAAGGCTATTGAACAGGCGCTGGCCGATGACGAATCCCGCGCGCGCGTATTGGCC
|
|
| Amino Acid Sequence |
>type VI secretion protein ImpA
MRFSSEFEAVETELAKAQSMHGGSQPDWQKVREISECLLRQHSKDLRVAVWLSWALYQRESFPGLLAGLGLLSHLCEHHWAAVHPAKLRTRGAAFGWLVL RLEQLFTQNLSIVDQQPLFQSILEHLSRLDDRWSECLGDNAPLLLPIRRQLSERLERAAQSSPEPAGVTGVITQVKQVATQLLKPESAIDNEKDAHKRLR TLQDQARSLCTWWLRQDATDLRALRLNRTLTWLPLATYPDADSEGVTSLRGPTPDKLKRYQERFAQGHYTDLMLELEASLAGAMFWFDGLRMVWECLQAL QANLAMTELEVSFALLLQRLPNLPEFCFHGGAPFADAATRDWITLQVARHLQKNEPLNVPVDTDAEPWETALQDVMPRLRQDGLKAAVGEIKQGLHAARS ERARFHWRLALARLCVLAGKHELAKIQLEHLDHELQHAGLDRWEPALALQVTQLLYRCCDLLPQSQAVRERKEHTHRRLCHFDLEAVLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|