Pseudomonas sp. KG01, ACR52_RS22045
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_c29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGTACCGTGTCAGCCTCAGTGTGCGGCCTCACTTCAAATACATGGGGGCGGATTTCACGTTGTCCCTGGTCGGAAAGCTCGATAAAGAATGAGCAGA GACCAGGGGATGACCTATCACCGCAGCCTCTTCGAGCGACTCGAAGGCCCGGCGCTCGGCCAGGCGAGCAGCGTAGAGTCCGTCGCGGCTCATCTGGGAA AGATGCTCAGCACCCGCGCGGGCAGCGTCCAGACGCAGCCCGACTACGGTTTGCCGGATCTGAATGACATGCGTCTTAGCCTGCATGAGTCATTAAGCCA GTCGCGCCTTTCGATCGAGCGCTTTATCCAGGCCTATGAACCGCGCCTGGTGAATGTGCACGTCAGGGTGCTGCCGCGTGATCGTGACCCCCTGGTTCTG GCGTTTGCCATTGATGCCTCGTTGAGGGTCAACGGTGTCATGCAGCCTGTGGTGTTCAACGCCCGTCTGGGTGGCGGCGGGCAGGTCGAGGTCGCGCCGG
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| DNA Sequence for Gene |
>ACR52_RS22045
ATGGCCTTTAATCGTTATTACCAAAGCGAGCTCAGCGCCTTGCGCCAGCTCGGGCGACGTTTCTCCGAGCGTAATCCTGCCCTGGCACCGTTTCTTGCCG ATGCCGGCCAGGACCCGGACGTGGAGCGTTTACTCGAAGGTTTTGCGTTTCTCACCGGTCGTCTGCGCCAGAAACTGGATGACGAATTACCCGAGCTGAC CCACTCGCTGATGCACCTGTTGTGGCCCAACTACATGCGGCCGCTGCCGGCGTTCAGCATCCTGCAGTTCGACCCGCTGAAACGTGCGGGCCCGGCCGTG TGCGTGGGGCGGGATACCTCAGTGGAAAGCGTGGCCATCGACGGCGAACGCTGTCGCTTCCGGACCTGCTGTGTCACTCAGGTCATGCCGCTGCAACTCA ATGCCCTGGAGTATGTCTTCCAGGGTGAGCGGGCCTTGCTGGACCTGCGTCTAGACATGAGCGCCCCGGGCAATTTCAGTGAGTTGGTATTCGAATCCAT GCGGCTGCACCTGGCAGGGGACCGTTACGTCAGCCAGGGGCTTTACCTGAGCCTGTTACGTCACCTCGAAGGCATTGAGTTGCTGTTACTGGGCGAGGAT GGCCAGCCTGTCAACGGGGCTGATGGACAGGCAATGTCGCTGCGGCTCAATGCCAGCCAGGTACAGCCGGTGGGGTTCTGCGAAGAACAGGCGTTGATTC CTTATCCGCGGAATACCTTTCGTGGCTATCGTCTGCTGCAGGAATACTTCGCCTTTCCTGACAAGTACCTGTTCGTGGATGTGAGTGGTCTTGATGGCCT GCACGCGCTGCCTCAAGCGCTGCTCAAGCAGGTGCGCAGCATGGTGATGCGGTTTGAACTGCGTATCCAGGGGCATGAACCACAACGCCCCAGCCTGGAC AACGTGAAGCTGTACTGCACGCCCATCGTCAACCTGTTCGCCCATGACGCGGTGCCGATCCGGCTGGATGGCAAACAGGATGAATACCTGCTGGTGCCGG GGGAATATTCGCGAGGCAACGCCGGTGTTTTTTCCGTGGACAAGGTCACGGGATGGCGCCCTGGCGGGCTGGGTTACCAGGCGTTCGTACCGTTCGAATC GTTTGAACATGACGGTGATACCGACGCATCGCCAGCGGCCCCCAGCTTCAGTATCCGTCAGCGTTCATCGGCGCAGCACGCGGGTCTCGATACGTGGGTG GCGTTCGGTGCCGGCCGAGGACACGAGCAGGAAACGCTGTCGATCGAGCTGACCTGTACCAATCAAAACCTGCCGCGGCAACTGCAGGTGGGCCAGATCA ATCAGCCCTGCGAGCAGACCCCGGAATTTCTGTCATTTCGCAATATCACCGTGCCCACCGCGAGTTTTGCACCGCCCCTGGATCAGGATTTCCTGTGGAA GCTCATCAGCAACATGTCGCTCAACTACCTGTCGTTGACCGATATCAATGCGTTGAAAGTGATCCTCGAAACCTACGACCTGCCGCGCTACCACGGCCGG CAAGCGCAGAAGGTCAGCGCGAAGAGACTGGGGGCATTGCAGTCCATCAGTCACGAAGCCGTCGACCGATTGCACCATGGCCTGCCGGTTCGCGGTTTGC GGGTGAACCTGACAATTGATCCCCAGGGCTTCCACGGCCCAGGCGACGTATTTGTATTCGCTTCAGTGCTCAACGAGTTTTTTGCGCTGTACACCAACCT CAATTCGTACCACGAACTGAGCGTTATCAGCACACAAGGAGATGTGTACCTATGGCCACCCCGGATGGGCCAGCAGCCTCTGCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGAAGTGTCCCGTGTCATCCGCGAGTATTCGTTGTTCCAGGCGGTACTGCAGGTGATCGAGCGCTTGCGTGTAGCCCATCCCTTCCTGGATGAGGACGC GTTGTATGACCAACTGGAATTCCAGGCCAATCCTGGCCTCGGGTTTCCCGGACACGACATCGATCGAGTGGAGTTTTTTGTGGAGTACGGTCAATTGCGA GCGCGGCTGCGCCTCAATGTACTGGGGCTGTTCGGCGCAGGTTCACCGCTGCCGGCGTTCTACGGTGAGCAGGCGTACGCGGAGTCGGCGGGTGGCAATT CCACTCGCGACTTTCTGAATGTGTTTCACCACCGCCTGCAGCGGCTGATGCTGCCGATCTGGCAAAAATATCGTTATCGGGCGCGCTTTGGCAGTGGGGC CAGTGATGCCTTTTCCGCGCAAATGTTTGCCCTGATTGGCCTGCGGGGCGAGGAAATTCGCCGTGCTACGCACCTGGACTGCAAGCGATTGTTGCCCTTC
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| Amino Acid Sequence |
>type VI secretion protein
MAFNRYYQSELSALRQLGRRFSERNPALAPFLADAGQDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPNYMRPLPAFSILQFDPLKRAGPAV CVGRDTSVESVAIDGERCRFRTCCVTQVMPLQLNALEYVFQGERALLDLRLDMSAPGNFSELVFESMRLHLAGDRYVSQGLYLSLLRHLEGIELLLLGED GQPVNGADGQAMSLRLNASQVQPVGFCEEQALIPYPRNTFRGYRLLQEYFAFPDKYLFVDVSGLDGLHALPQALLKQVRSMVMRFELRIQGHEPQRPSLD NVKLYCTPIVNLFAHDAVPIRLDGKQDEYLLVPGEYSRGNAGVFSVDKVTGWRPGGLGYQAFVPFESFEHDGDTDASPAAPSFSIRQRSSAQHAGLDTWV AFGAGRGHEQETLSIELTCTNQNLPRQLQVGQINQPCEQTPEFLSFRNITVPTASFAPPLDQDFLWKLISNMSLNYLSLTDINALKVILETYDLPRYHGR QAQKVSAKRLGALQSISHEAVDRLHHGLPVRGLRVNLTIDPQGFHGPGDVFVFASVLNEFFALYTNLNSYHELSVISTQGDVYLWPPRMGQQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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