Pseudomonas sp. KG01, ACR52_RS22020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_c29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCTGGTGGAGCGGGCGGTGCTGCTGTGTGACGACGATATAATTCTGCCGGCGCACCTGGCGCTGGCGCCGGTTCCTGCGGCCGTCCCGGATTCGACGCT ACGTCACCGCCTGGAGAGGGTGGAGCGCGTATTCCTGATCGATTGTCTGCAGAAGAACCGTGGTAACCGAACCCGTACCGCCCGTGAACTGGGGGTAGCA CGCCGTACGCTGCTCTACCGCCTTGCGCGCTTGAACATCCCTTTTGGTGAGGTCAAGGGGTAATGCCAAAAGGTGTACCCGAGCATTCCGATAATTCACC GGCGCCTCCAAGGATTCGTGCCGGACTGCCTTACTTCTATGGGAGTTACCTGATGCCTGATCGTCCGTGGCAAGCCGTGGTGCTTGTGTTGTGTTTGCTG GGCGGCTGTAACGCCAATTACGTCTTCGATGATGCTGACTACCGTCCGTTGGGTGACCCGCAGGCGATCACTCGCGGCCAGTAAAGGGGGGGGGCTGACC
|
|
| DNA Sequence for Gene |
>ACR52_RS22020
ATGCAATTAGTGTTAGAAGTGTTTGACTCCGCGGGCGCAGAGTCAGTGCCAACGGTCTGCAAGACCTTCGAGGGTGCTGGCGGTGTGATAGGCCGTGGGG CCGGCTGCGACTGGGTGATTCCCGATCCCAGCCGTCTGCTTTCCAGCCACCATGGCCTGGTGAGCTTCCGTGAAGGTCGCTATTTCCTGACCGATATCAG CAGCAATGGCATTTGCGTGATTGGCAGCCAGGAACGCCTGCGAAAAGGGCAGGCGCGACTGATCAGTGAGGGTGACGTATTTCAATTGGGGGAGTTGATT ATACGGGCACGACTGATCGGCACGTTGGTGCAGCACAACCCACACAGGGTTGCGGCGGCTGAACCGATTCCCGACGATGCCTTTCTGGCGTTGGACCCCG TGCATGCGCTGGATGAGGAGCATCTGGCCCAAAGCTCCTCGGATGAGTTGGAGGCGTTGAAGGCGATCACCGACGAGCTCGGGCAATGGATGGATCACCG CGCAGCAGAAAGGGAATTCCTGCCCGTGCCTCGATGCGTCGAGCCTGTTCGTGAAGTGCCAGAGCCCCAGCCTGTGACGACTGCGCTTGCTGTCAATGAG GCGTTTTGGGCGCAGTTCGCAGCGGCGCTTGGCATACCGGTGGACGGCCTTGATACGCCAAGTCGAGAGGCGTTGGCAATCAAAGTGGCGAGTTTACTGA GGCACGGTATCGCAGGGTTGCAGCAATGCCTGCGGACCTGCGACGAACTGAAAACCGAGTCGAGCCTGGGTTCTGCAGAGTCCCCTTTCAACAGCCCCAA CCCGTTGAGGAACTGCGTGGATGCCCAGGCGGCATTGACGGCATTGCTGGGCACCAACGAGTTGGGCCAACTGCCCGCCGAGCTGGCTATTACTCAAGTG CATCGGGACCTGCAAACGCATCAGGTTGCCTTGCTCACGGCGTGTCGCAGCGCATTGCGCAGCGTTCGAGCCGCGTTCGCGCCCGGCCACCTGCAGTTGT GTTTCGAGCTTCAGGACAAACCGCCCAGGTTTAACACCGACGGTGCGAATTGGCGGGCGTATCAACGTCACTACCAGTACTTGATCGCGGATGAACAATT GAACGAACGCCTGCTGGGCAACGACTTCGTCAAAGCCTATGAGGAACAGGTCCGCCTGATCTCCACCCTCCATGCTGTCTACACAGGATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGTTCATGTATCGAGCCACGCTTGCATCGATGCTGTTGTTACTTGGCCTGTTGGCCGGGTGCAGCTCGCTTTCGCCTTTTTCGACCCTGACCAAGCTGGA CCTGACGTTGGTGGCCAGTGATCAGGTCAATCCCGACTTGCACGGTCGTCCCTCTCCGGTGGTGATACACCTGCTTGAGTTGCGACACCCCGTGGCCTTC GAGAATGCTGACTTCTTCAGCCTCTATGGCCGTGCCGAACAGTCCTTGCCCAAGGACTGGGTGAGCAGCGAGGAGCTGGAAATGCGCCCTGGTCAGCGGT TGACGCTCAAGCTCAGCGTTTCACCGCAGAGCCGTTATGTGGGGGTGCTGGCGGCCTATCGAGATCTGCCCCATGTGCAATGGCGGCTGGTTGTGCCGGT TACGCCGCAGCGACTGACACGGACCGAGTTGGTGCTTGATCAGGCGGGTATCCGGGTCGGCAACCCACTCTTCGGCTCGACAAAGGATTGATATGCACGT
|
|
| Amino Acid Sequence |
>type VI secretion protein
MQLVLEVFDSAGAESVPTVCKTFEGAGGVIGRGAGCDWVIPDPSRLLSSHHGLVSFREGRYFLTDISSNGICVIGSQERLRKGQARLISEGDVFQLGELI IRARLIGTLVQHNPHRVAAAEPIPDDAFLALDPVHALDEEHLAQSSSDELEALKAITDELGQWMDHRAAEREFLPVPRCVEPVREVPEPQPVTTALAVNE AFWAQFAAALGIPVDGLDTPSREALAIKVASLLRHGIAGLQQCLRTCDELKTESSLGSAESPFNSPNPLRNCVDAQAALTALLGTNELGQLPAELAITQV HRDLQTHQVALLTACRSALRSVRAAFAPGHLQLCFELQDKPPRFNTDGANWRAYQRHYQYLIADEQLNERLLGNDFVKAYEEQVRLISTLHAVYTG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|