Pseudomonas sp. KG01, ACR52_RS22010
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_c29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGATGACGTTCATGTATCGAGCCACGCTTGCATCGATGCTGTTGTTACTTGGCCTGTTGGCCGGGTGCAGCTCGCTTTCGCCTTTTTCGACCCTGACC AAGCTGGACCTGACGTTGGTGGCCAGTGATCAGGTCAATCCCGACTTGCACGGTCGTCCCTCTCCGGTGGTGATACACCTGCTTGAGTTGCGACACCCCG TGGCCTTCGAGAATGCTGACTTCTTCAGCCTCTATGGCCGTGCCGAACAGTCCTTGCCCAAGGACTGGGTGAGCAGCGAGGAGCTGGAAATGCGCCCTGG TCAGCGGTTGACGCTCAAGCTCAGCGTTTCACCGCAGAGCCGTTATGTGGGGGTGCTGGCGGCCTATCGAGATCTGCCCCATGTGCAATGGCGGCTGGTT GTGCCGGTTACGCCGCAGCGACTGACACGGACCGAGTTGGTGCTTGATCAGGCGGGTATCCGGGTCGGCAACCCACTCTTCGGCTCGACAAAGGATTGAT
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| DNA Sequence for Gene |
>ACR52_RS22010
ATGCACGTTCATAAAGTCATCTGGCAGGAAGGCATGTTGTTGCGGCCCCAGCACCTGCAGCACAACGATCGTTACTACAACCAGCAACTCAACCGGACCC GTTTGCTTGGCAGCGATGCCTGGGGGTTTCTCAGTCTCGACGTCGACTTGCAGTACCTGAATCTGGGCAAGGTCGTCGTGACCCAGGCCAGTGGTGTGTT ACCCGACGGCAGCCTGTTTGAGTTGAGCACGGCCATGGAACCGTTGGTACTGCAGGTGCCGGCCAACTCGGGGCGGCAAGGGATTTATCTGGCATTGCCG TTGGCAACCAGTAACCAGATCGAGGCGCGCAAGTCCGACCAGGCCGATGTACTGGCGCGCTATATCAGCTGCACAACTGAGGTAGGCGACTCTAACGCGG GTGTCGACTCCCGTTGCCAGATCAACTGTGGCCGTCCGGATCTGCGCCTGCTTTTGGGGGAGCAGCACAGTGAGCAGGTTTTCGTGAAGCTGAAGGTCGC CCAGGTGCTGGACTCCACGGATGAAGAGGGGGTGAGCCTGGATACGGATTTCGTCCCGACGTTCATGTATCTGCAAGGGTCAGGTTATGTGTCGTCGTGC CTCAAGGAAGTGGTCAGTTTGCTGGCCTGTCGAGGCGATGCCATCGCAGGGCGTATTCAGGGTAGCGGCGCGGGCTCAGGCACGCAGATCGGGGACTTTC TGATGCTGCAACTGATCAATCGTTGCGAGTTGGTGCTGCGTCATTACTTGAGCCAGTCCCAGGTTCGTCCGGAAGCCTTGTACCGGGAGTTGTTATCGAT CTTCGGTGAGTTATCGACATTCGCCCACGACAGCAAGCGCGCACATCTGGATGGGCGCTATCGGCATAACGATCAGGGCGCGAGCTTTCGTGGGCTGATG GAGGGCATTCGTACGGTGCTGTCGATGGTGCTGGAGCAGCACGCGATGGAACTGGCGCTGCAACAACGCCAGTACGGCGTGATGGTCTGCCCGGTGAGCG ACCTCAAGTTGCTTGGCAGTGCAACCTTCATTCTGGCGGCCCGCGCACAGTGTGATTCGGATGAGCTGCGCCATCGTTTGCCGGCACACCTAAAGATCGG GCCCGTGGAGCGCATACGTGAACTGGTCAACCTGCATCTGGCGGGCATCAAGGTCAAGGCGCTGCCCGTGGCGCCGCGCCAGCTTCCGTTTCACGCGGGC AAAACCTATTTCATGCTCGAACTCAGCGCCCGCGACATCACGCAACTAGAGCAATCGGGTGGTTTTGCCTTCCATGTGGGCGGCGAATTTTCCGAGCTTG AACTCAACTTCTGGGCCATCAGGAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACCATGAAGACGGACAGTGAATATCCTCAGGATGAGAAAACCGTCCTGCTCGACCGCGAGGGGCGCGGGCCGGCGCAGGGCGCGATGACTGACTTTCC ATCGCCCCCGCGTTTCGAACATCTTGAGGACCGAATCATCTACGCCGCCCATTTGCGGGGTGCGCAGACGTTCAATATGGGGCTCAACCTCTTGGTGGCC GCCGCCTGGGAGTTACTGTCGGAGTTGGCCCGTCTCAAGGCAAGCTCTGGCCGGGAAAGCCTGAATACGCTCAACGACCGGCTGTCAGCGGGGGTTAAGC AGTTCGAGACGCGAGCCCTGCACAACGGTGCTGAAAACGCCCAGGTCATGTCTGCGCGCTATGTGCTGTGCAGTGTGGTTGACGAAGCCGTGGTCACCAC TGCCTGGGGGAGTCGCAGCGACTGGTCGAAGATGAGCCTGCTGAGCCGTTTTCATAACGAAACCTTCGGCGGCGAAAAGTTTTTCCAGTTGCTGGAGCGA
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| Amino Acid Sequence |
>type VI secretion protein
MHVHKVIWQEGMLLRPQHLQHNDRYYNQQLNRTRLLGSDAWGFLSLDVDLQYLNLGKVVVTQASGVLPDGSLFELSTAMEPLVLQVPANSGRQGIYLALP LATSNQIEARKSDQADVLARYISCTTEVGDSNAGVDSRCQINCGRPDLRLLLGEQHSEQVFVKLKVAQVLDSTDEEGVSLDTDFVPTFMYLQGSGYVSSC LKEVVSLLACRGDAIAGRIQGSGAGSGTQIGDFLMLQLINRCELVLRHYLSQSQVRPEALYRELLSIFGELSTFAHDSKRAHLDGRYRHNDQGASFRGLM EGIRTVLSMVLEQHAMELALQQRQYGVMVCPVSDLKLLGSATFILAARAQCDSDELRHRLPAHLKIGPVERIRELVNLHLAGIKVKALPVAPRQLPFHAG KTYFMLELSARDITQLEQSGGFAFHVGGEFSELELNFWAIRN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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