Strain | Pseudomonas sp. KG01 sole5_c22, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCGCCTTCCGCGCCGGCAGCTTGAAGCAGGTCGGCCAGGACCAGGCCAAGGCCACACTGATCCAGGACGATGGCAGCCTGTATCCGCTGCCGGGCAAATT GCTGTTCGCCGAGATCAGCGTCGACCCCGGCACGGGGCAGATCATCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTATTGCCCGGCAGCTTTGTG CGCGTGCGCCTGGAGCAGGCGGTCGACAAACAAGGCATCAGCGTGCCGCAACGCGCGATCACGCGTGACAGCGCCGGCATCCCGATGGTGCTGCTGTTGG ACGCCGAGCAGACCGTGAGCCAGCAGCCGGTGGAACTGGGTGCGGTGATCGAGGATCGCTGGGTCGTCAGCAACGGCCTCAAGCCCGGCGACCGCATCAT CGTCGAAGGCCTGCAACACGCGCGCCCCGGTGAAAAAGTCCAGGTAGATGACAGCCCGACACCGCTCGCCCAGGCTTTGGGCCAATAAGGATTATTGACA
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DNA Sequence for Gene |
>ACR52_RS19295
ATGCCGCAGTTCTTTATTGACCGCCCGATCTTCGCCTGGGTGGTCGCCCTGTTTATCCTGCTGGCCGGCGCGCTGGCCATCCCGCAGTTGCCGGTGGCCC AGTACCCCGTTGTGGCGCCGCCGCAAGTCGAAATCTACGCGGTGTACCCCGGCGCCTCGGCCCAGACCCTGGACGAAAGCGTGGTCAGCCTGATCGAGCA GGAGCTTAACGGCGCCGATCACCTGCTGTATTTCGAGTCCCAAAGCAGCCTGGGTTCGGCCACCATCACCGCCACCTTCCAGCCGGGCACCGACCCTGAA ATGGCCCAGGTCGATGTGCAAAACCGTCTCAAGGCGGTCGAGCCGCGCCTGCCCCAGGCGGTGAACCAGCAAGGTTTGCAGGTGGAAAAAGTCTCCGCTG GCTTCCTGCTGCTGGTGACCCTGACGTCCAGCGACGGCAAGCTTGATGACGTGGCGCTCAGCGATTACCTCGCGCGCAACGTGATGAACGAGCTCAAGCG CCTGGACGGCGTGGGCAAGGCGCAGTTGTATGGCGCCGAACGGGCGATGCGCATCTGGATCGACCCGCAGAAACTGATCGGTTTCAACCTGACCCCGGCC GACGTCAATGCCGCGATCAGCGCGCAGAACGCCCAGGTCTCGGCGGGTAGTATCGGTGACTTGCCGGGCACCAAGACCCAGGAAATCACCGCAGCGATCC TGGTCAAAGGCCAGCTGTCGACCCCGGCGGAATTCGCCGACATCGTGCTCAAGGCCAATCCTGACGGCTCCACCGTGCGTATCGGCGACGTGGCGCGGGT GGAAATCGGCAGCCAGGAATACCAGTTCTCCACGCGTCTGAACGGCAAGCCTTCCACCGCCGTCAGCGTGCAGTTGGCACCGGGCGCCAACGCGCTGAAC ACCGCGACCCTGGTGCGGGCGAAGATGGACGAGTTGTCGCGCTACTTCCCTGCCAACGTGGAATACAAGATTCCGTATGACACCTCGCCGTTCGTCAAGG TCTCGATCACCAAGGTGGTGTACACCTTGCTTGAGGCGATGGCGCTGGTGTTTGCGGTGATGTTCCTGTTCCTGCAGAACGTGCGTTACACGCTGATCCC GACCCTGGTGGTGCCTATTGCGCTGATGGGCACGTTCGCCACCATGCTGTTGCTGGGTTTCTCGATCAACGTGCTGACCATGTTCGGCATGGTGCTGGCG ATCGGCATCCTGGTGGACGATGCGATTGTGGTGGTAGAGAACGTTGAGCGGATCATGGTCACCGAAGGCCTGTCGCCCAAGGACGCGACCAAGAAGGCCA TGAGCCAGATCACCGGTGCTATCGTCGGTATTACGCTGGTGCTGGTGGCGGTGTTTCTGCCAATGGCCTTCATGCCGGGCTCGGTGGGGGTGATTTACCA GCAGTTTTCGCTGTCGATGGCCACCTCGATCCTGTTCTCGGCGTTCCTCGCCCTGACCTTGACACCTGCCCTGTGCGCGACCTTGCTCAAGCCAATCGCC AAGGATGATCACCACGCCAAGGGCGGTTTCTTCGGCTGGTTCAACAAGCGTTTTGAGCAGCTCACCGACCGCTACGAAGGTTGGGTGGCCTATGCCCTCA AGCGCAGCGGCCGCTACCTGCTGATTTATCTCGTGCTGCTGGTGGGCCTGGGGTGGATGTTCAGTCGCCTGCCCTCCTCGTTCCTGCCGGTGGAAGACCA GGGTTACACCATCACCGATATCCAACTGCCGCCGGGCGCCAGCAAGAACCGCACGGTGCAGGTGGCCGAGCAGATCGAGGCGCACAACGCCGAAGAGCCG GGGGTGGGCGATACCACCATGATCATGGGCTTCAGTTTCTCCGGTTCAGGGCAAAACGCCGCGTTGGCGTTTACCACGCTGAAGGATTGGTCGCAGCGCG GCAGCGAGGACTCCGCCTCGGCAATTGCCGACCGTGCCAACGCGGCTTTCAGCGAACTCAAGGACGCGATTGCCTACGCGATCCTGCCTCCGCCGGTAAA CGGCCTCGGCACCTCCAGCGGTTTCGAATTCCGCCTGCAGGACCGGGGTGGCGTCGGCCACGCGGCGCTGATGGCGGCGCGGACCGAGTTGCTGGCTGCC GCCGAGAAGAGCCCGATCCTGGCCAACGTACGTGAAAGCGCCCTGGCCGAAGCACCGCAAGTACAACTGGAAGTCGACCGTAAGCAGGCCAATGCGCTGG GTGTCTCGTTTGCCGATGTGGGCAATGTGCTGTCGTCGGCGATTGGCTCAGCGTATATCAACGACTTCCCCAACCAGGGCCGCATGCAACGGGTGGTGGT GCAAGCCGAAGGCGACCAGCGCAGCCAGGTCGCGGATTTGATGAAGATCAACGTGCGTAACAACGCCGGGAAGATGGTGCCGCTGTCGGCGTTTGTCGAA GCCAAGTGGACCCAGGGCCCGGCGCAGTTGACGCGCTACAACGGCTACCCGGCCATCGCCATTTCCGGCGAAGCGGCACCGGGGCACAGCACGGGTGAGG CGATGGAGGAAATCCAGCGTCTGGTCAATCAACTGCCGGCGGGCCTGGGCCAGGAATGGACCGGGTTGTCGTTGCAGGAACGCCTGTCCGGCTCCCAGGC GCCTTTGCTGCTGGGGCTGTCGCTGCTGATCGTATTCCTGTGCCTGGCGGCGTTGTATGAAAGCTGGTCGATCCCGACTTCAGTGCTGCTGGTGGTGCCA TTGGGTGTGCTCGGCGCGGTCGTGGCGGTGTCGTTGCGCGGCATGCCCAACGATGTGTTCTTCAAGGTTGGCTTGATCACCATCATTGGCCTGTCGGCAA AAAACGCGATCCTGATCATCGAATTCGCCAAGGACCTGTATGACCAGGGCGAAGATCTGGTCGATGCCACCCTGAAGGCCGCGCGGCTGCGCTTGCGGCC GATCATCATGACGTCACTGGCATTCATCCTCGGCGTGGTGCCGTTGGCGATTGCCACGGGCGCCAGTTCGGCGAGCCAGCAGGCGATTGGTACGGGCGTT ATCGGCGGGATGATCACCGCGACACTGGCGGTGGTGTTTGTGCCGGTGTTTTTTGTGGTGGTGATGAAGCTGGTGCGCAAGCAACGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CTACGCGCCGGTTGTGGCGAGGGAGCTTGCCCTAATGCCGATCAGTTAAGGGCGGGCACCGTACCTGTGGCGAGGGAGCTTGCTCCCGTTGGGCCGCGAA GCGGCCCCAAAACCTGACGCCGCGTTTTGCCTGAAAAAACGTGTGGCTTTCAATGGGGCTGCTTCGCAGCCCAACGCGGGGCAAGCCCGCTCGCCACAAC AAGCCTACTCGCCACAACAAGCCCGCTCGCCACAGTAAGTCAGCCTCCACGGAATGCGCTATGGTGCTCACAAGCACCGTACTTGTGAGCCGCCATGCCC TTCCTCGCCCGCACCCACCCTCGCCTCTCCTGCGCCGCCGTGCTGGGCCTTGCCGTTGGCATCCTCGTACCGGCCGAGTCCCTCGTCAGCAAAATCCTGA TCGGCTGGAACGCCGGCGTCTGGACCTACCTGGTGCTGATGCTGTGGCTGACCATCCGCGCCAAGGCTCACGACGTCAAACGCATCGCCGAGATCGAGGA
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Amino Acid Sequence |
>acriflavine resistance protein B
MPQFFIDRPIFAWVVALFILLAGALAIPQLPVAQYPVVAPPQVEIYAVYPGASAQTLDESVVSLIEQELNGADHLLYFESQSSLGSATITATFQPGTDPE MAQVDVQNRLKAVEPRLPQAVNQQGLQVEKVSAGFLLLVTLTSSDGKLDDVALSDYLARNVMNELKRLDGVGKAQLYGAERAMRIWIDPQKLIGFNLTPA DVNAAISAQNAQVSAGSIGDLPGTKTQEITAAILVKGQLSTPAEFADIVLKANPDGSTVRIGDVARVEIGSQEYQFSTRLNGKPSTAVSVQLAPGANALN TATLVRAKMDELSRYFPANVEYKIPYDTSPFVKVSITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALMGTFATMLLLGFSINVLTMFGMVLA IGILVDDAIVVVENVERIMVTEGLSPKDATKKAMSQITGAIVGITLVLVAVFLPMAFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIA KDDHHAKGGFFGWFNKRFEQLTDRYEGWVAYALKRSGRYLLIYLVLLVGLGWMFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVAEQIEAHNAEEP GVGDTTMIMGFSFSGSGQNAALAFTTLKDWSQRGSEDSASAIADRANAAFSELKDAIAYAILPPPVNGLGTSSGFEFRLQDRGGVGHAALMAARTELLAA AEKSPILANVRESALAEAPQVQLEVDRKQANALGVSFADVGNVLSSAIGSAYINDFPNQGRMQRVVVQAEGDQRSQVADLMKINVRNNAGKMVPLSAFVE AKWTQGPAQLTRYNGYPAIAISGEAAPGHSTGEAMEEIQRLVNQLPAGLGQEWTGLSLQERLSGSQAPLLLGLSLLIVFLCLAALYESWSIPTSVLLVVP LGVLGAVVAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKDLYDQGEDLVDATLKAARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGV IGGMITATLAVVFVPVFFVVVMKLVRKQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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