Pseudomonas sp. KG01, ACR52_RS14825
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_c16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGGCGAGCGTGACGCGGTGTTCAACGTCTATGAATCGTTGCTGGTAGAGCCACCGGCGGATGTGCCGATTACCGTCAGCCTGCTGGATAACCCAAGTA TCAAGGCCGTGGGCAAAGTGCGCGAAGTCACCCCGGCCGTGGCCGCCAACACCGGCACCGTGCAAGTGAAGATCGCCCTGCAGGCGCTGCCCAAAGGCAT GGAATTGGGCTCGGTGGTCAGCGCCACTGCCAATGGCCCGGCCAAGCCCAGCATCGAGTTGCCGTGGGCCGCACTGACCAAAGACCTCAGCGAACCCGCC GTGTGGCTGGTGGACGGCGACGGCAAAGCGCAATTGCACAAGGTCAGCGTGGCGCGTTATCTCACCGGTAAAGTCATCATCAGCGACGGCCTCAAGGGCG GTGAAAAAGTCGTGGTGGCCGGCGGGCAATTGCTGCACCCCGGCATGCTCGTCGAGATCGCCCAGCCACCGGATCAAGCCCAGGCCCAGGGAGTGCAACC
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| DNA Sequence for Gene |
>ACR52_RS14825
ATGAAGCAGCTGACGGTTGTACTCGCCGCCAGCCTGCTGCTGGTGGCCTGCTCCAAGGAAGAACCGCCGCCCGAGCCCGTGCGCCCGGTGCTGTCGATGG AAGTGAGGTCCGAAGACCAGGAGACCCTCGGCCGCTTCGCCGGCACCCTACAGGCCCGTTACGAAAGTAACCTCGGTTTCCGCGTGCCCGGCCGCATCGC CCGCCGCGCCGTGGATGTCGGCGCCGAAGTCGAGAAGGGCGCCTTGCTCGCTGTCCTCGACCCCACCGACCAACAGAACCAACTGCGCGCCGCCCAGGGC GACCTTGCTCGTGTGCAGGCGCAGTTCATCAACGCCCAGGCCAACGCCCGGCGCCAGCAGGAATTGTTCAACCGTGGTGTCGGCGCCCAGGCCCAACTCG ACGTAGCCCTGACCGACCTGAAAACCACCCAGGCCAGCCTCGACCAGGCCAAGGCCTCGGTCAACCAGGCCAAGGACCAGCTCAACTACGCCGAACTGCG CACCGACCACGCCGGCATCGTCACCGCCTGGAACGCCGAGGCCGGCCAGGTAGTCAGCGCCGGCCAGCAGGTGGTGACCCTGGCCCGGCCGGATATCAAG GAGGCGGTGATCGACCTGCCCGCCGGCCTCGCCGAGCGCCTGCCCAGCGATGTGGTGTTCCTCGTCGCCGGGCAACTCGACCCGAGCGTCAACACCACCG CCACCGTGCGTGAGATCGAACCCCAGGCCCAAAGCGCCACGCGCACGCGTCGTGCGCGCCTGACCCTGGCCGAGACGCCCGCCGCGTTTCGCCTCGGTAC CGCGATCAGCGTGACCTTGAGTTCAGCCATCGCCCCACGCATCGAATTGCCCCTCAGCGCCTTGCAGCAAGTCGACGGCAAGACCCGCATCTGGATGCTC GACACCCAGAGCCAGACGGTGCAGCCGCGCGACGTCAGCGTCATCAGCCGTGACGCCGACAGCGCCTTGCTCAGCGGCGGCGTCAAACCCGGCGAGCGCA TCGTTACCGCCGGCGTGAACAGCCTGAAACCCGGGCAAAAAGTCAAAATCGACGAGGACAGCCCGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGGAGCTTCAACTTATCCGACTGGGCCCTCAAGCATCAGTCCTTCGTCTGGTACCTGATGTTCGTCGCGCTGCTGATGGGCGTGTTTTCCTACATGAA CCTGGGCCGCGAGGAAGACCCTTCGTTCACCATCAAGACCATGGTGATCCAGACCCGCTGGCCGGGCGCGACCCAGGAAGAAACCCTCAAGCAGGTCACT GACCGCATCGAGAAAAAACTCGAAGAGCTCGACGCCCTCGACTATGTGAAAAGCTACACCCGGCCCGGCGAGTCCACGGTGTTCGTATTCCTCAAGGACA CCACCAGCGCCAAGGCGATCCCCGAGATCTGGTACCAGGTGCGCAAGAAGATCGACGACATTCGCGGCACCTTCCCCCAGGGTTTGCAGGGGCCGTCGTT CAACGATGAGTTCGGTGACGTGTTCGGTTCGGTGTATGCGTTTACCGGCGATGGCCTGTCGATGCGTCAGTTGCGCGACTACGTCGAGCAGGTGCGCGCG
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| Amino Acid Sequence |
>RND transporter
MKQLTVVLAASLLLVACSKEEPPPEPVRPVLSMEVRSEDQETLGRFAGTLQARYESNLGFRVPGRIARRAVDVGAEVEKGALLAVLDPTDQQNQLRAAQG DLARVQAQFINAQANARRQQELFNRGVGAQAQLDVALTDLKTTQASLDQAKASVNQAKDQLNYAELRTDHAGIVTAWNAEAGQVVSAGQQVVTLARPDIK EAVIDLPAGLAERLPSDVVFLVAGQLDPSVNTTATVREIEPQAQSATRTRRARLTLAETPAAFRLGTAISVTLSSAIAPRIELPLSALQQVDGKTRIWML DTQSQTVQPRDVSVISRDADSALLSGGVKPGERIVTAGVNSLKPGQKVKIDEDSPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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