Pseudomonas sp. KG01, ACR52_RS02300 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. KG01 sole5_c1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCAGCGACCAGAAGATCAGCGCCAGGATCCCCAATACGCCGTCATGGTTGACCTGAACCCCATAACCGCCGTTGAACACCTCTTTGAGGGTGTAGAGCGG GCTGGTACCGATATCGCCGTAAACCACCCCGACCGCTGCCACCAGCATGCCTATCGGCTTGGCGTTTGAATGCTCGGCATCCGCTGCCTGACTACTTGCC TGACCCATCAACCACTCCTGCCCTTTGACCTGAGGTCTTTTATAAACAACGCGTCTAAGCTGAACCCAGCATGATGCGCCGTTTTACTTCTCGTAACAGA CGTTTTATTGACCCCCGGGTTTCACCCGTGTGCAACGGCGGGAAGCATAGCGCAGCACTCGTCGCATTTCCCTGCATAAAGCTGGTCAAGTGCGTTGCCC GTCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCACCAAGCGCCCGTCCGCAGCCCTGTCGTGCCCGACTGGCGGCGTCATTCAATACCGAGGTTAGAC
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| DNA Sequence for Gene |
>ACR52_RS02300
|rimO
ATGTCCACCACCATCGCAAAAGCCAACCCCAAGGTTGGCTTTGTTTCCCTGGGTTGCCCGAAGGCTCTGGTCGACTCCGAACGCATCCTGACGCAATTGC GCATGGAAGGTTATGACGTCGTGTCCACTTACCAGGACGCTGACGTGGTGGTGGTCAACACCTGCGGCTTCATTGACTCGGCCAAGGCGGAGTCCCTGGA AGTGATCGGCGAAGCCATCAAGGAGAACGGCAAGGTCATCGTCACCGGCTGCATGGGTGTCGAAGAAGGCAACATCCGCAAGGTGCACCCGAGCGTGCTG GCCGTGACCGGCCCGCAGCAGTACGAGCAGGTAGTCAATGCCGTGCACCAAGTGGTGCCGCCGCGCCAGGACCACAACCCGCTGATCGACCTGGTGCCGC CGCAAGGTATCAAGCTGACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAGCTGGTCAGCCGCCCGGTCGGTGATGTGCTGGACGAAGCCCAGCGCCTGGTCAAATCCGGCGTGAAAGAGCTGCTGGTGATCTCCCAGGACACCAGC GCCTATGGCGTCGACGTGAAATACCGCACCGGCTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAACTCTGCGAAGCCCTCAGCAGCCTGGGCG TGTGGGTGCGCCTGCACTACGTTTACCCGTACCCGCACGTGGATGAGCTGATCCCGTTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAGTCCTCAAGGCCATGAAACGCCCAGCCTTCGAAGACAAGACCCTGGCGCGCATCAAGAACTGGCGCGAGATCTGCCCGGAA CTGATCATCCGTTCGACCTTTATCGTCGGCTTCCCCGGCGAAACCGAAGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAAGCCCAACTGGACCGCG TCGGCTGCTTCCAGTACTCGCCGGTGGAAGGTGCTCCGGCCAATCTGCTGGACCTGGCCGTGGTGCCAGATGACGTCAAGCAAGACCGTTGGGATCGCTT CATGGCGCACCAACAGGCCATCAGCTCGGCGCGCCTGCAACTGCGCATCGGCAAGGAAATCGAAGTACTGATCGACGAAGTCGACGAACAGGGCGCGGTT GGCCGCTGCTTCTTCGACGCCCCGGAAATCGACGGTAATGTGTTTATCGACGATGCCAGCGGCTTGAAGCCGGGCGACAAGGTGTGGTGCACCGTGACCG ACGCCGACGAGTACGATTTGTGGGCTGAAAAACGCGTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGTAAAAAATTGAAAAAGCCCTGCCTCTGGACAAGATGCGGGGCTTTTTTAGGTCTATCGTTTTGCCCATCAGCACCGATCACCGGCAAGGGGCAGCG GGCATGCGTCAGCATTCGACTATCCACACACCTAAAACCAGCGACTACCCAGAGTTGGCGCGCATCTGGGAGGCCTCGGTGCGGGCCACCCATGTTTTTT TGCCGGACAGTTACATCGTGTTGCTGAAAAACCTGGTGCTGACCCGCTACCTGGATGCCGTCATGCTGATCTGCACCAAGGACTCGCGCCAGCGTATCAC CGGGTTTGCCGGGGTGGCGGCGGGCAAGGTCGAGATGCTGTTCATTGACCCGCAGCACCGGGGCCAGGGCCTGGGCCGGCAATTGCTGCGTTATGCGATC GAGTGTATGAATGCCGATCAATTGGACGTCAACGAACAGAACCCGCAGGCCCTGGGGTTTTACTTCAAGCAGGGCTTTGAGGTGATTGGACGCACGGAAC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTTIAKANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRKVHPSVL AVTGPQQYEQVVNAVHQVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPE LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDLAVVPDDVKQDRWDRFMAHQQAISSARLQLRIGKEIEVLIDEVDEQGAV GRCFFDAPEIDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAEKRV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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