Pseudomonas sp. HMP271, DP64_RS11015
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTTCCAGATTGGCTTCGATGCGGTCGGCGATCTTCAGCAGGATCAGTGCGCGCGCCTGCACGCTGGTCTTGCCCCAGGCGTCGGCGGCGGCATGCGCGG CGTCCAGCGCCCTTTCGATATCGGCGGCGTCGGAGCGCGGGAACTCGGCGATCGGCTGGCCATTGACCGGCGACAGGTTGGTGAAGTACTGACCGCCGAC CGGCTCGACGAACTGACCGTTGATGTAGTTGCCGTAGCGGGGTTTGAACGTGACCAGGGCACCCTCGGTGCCGGGATGGGCGTAACGCATGGTGAGTCTC CGGTTCTTGCAAGGGTCGTGAGAACGGCGGTCGTTTCAGCGTAGATCAGCTTCAGGCAGTCTGCGACCGAGCCGACATTCGGGTGCGGCGCCGCCGTCGA GCGGCCGATGCGGCGCGGTGCTGTGCTAATCTGCCGCGCAGTTTCCGGCCCCTGCCGGCCGCCCCCGACGGGCGTCGCGCAGGCATTGCAGAGGTCTTCA
|
|
| DNA Sequence for Gene |
>DP64_RS11015
ATGCACATCCATATTCTCGGCATCTGCGGCACCTTCATGGGTTCGCTTGCGGTGCTGGCCAAGGAGCTTGGCCATCGCGTCACCGGCTCCGATGCCAACG TCTATCCGCCGATGAGCACGCAGCTCGAAGCCCAGGGCATCGAGCTGATGCAGGGTTACGAACCGGCGCATCTGCAACCCGCGCCCGATCTGGTGGTGGT GGGTAACGCGCTGTCGCGCGGCAACCCGGCGGTCGAGTACGTGCTGAACAAGGGCATGCCCTATGTCTCCGGCCCGCAGTGGCTGGCCGATCACGTGCTG CAGGGCCGTTGGGTGCTGGCCGCCGCCGGCACCCATGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCATGCCGGCATGAGTCCGGGCT TCCTCATCGGTGGGGTGCCGCAGAACTTCGGCATCTCGGCGCGGCTGGGCGACACGCCGTTCTTCGTGGTCGAGGCGGACGAATACGACAGCGCCTTCTT CGACAAGCGCAGCAAGTTCGTCCACTACCGCCCGCGCACCGCGATCCTGAACAATCTGGAATTCGACCACGCGGACATCTTTCCGGATCTTGCCGCCATC GAACGGCAATTCCACCATCTGGTGCGCACCGTACCGGGCGAGGGGCTGATCATCCATCCCGCGTCGGAAACGGCGCTCAAGCGCGTCATCGGCATGGGCT GCTGGACGCCGGTGCAGACCACCGGCGAGGGCGGCCAGTGGCAGGCCCGGCTGCTCCGCGAGGACGGTTCGCGCTTCGAGGTGAGCTTCGACGGCGCCGT GCAGGGCGTGGTGGAGTGGGAGCTGACCGGCCGGCACAACGTCAACAATGCGCTGGCCACGCTGGCGGCGGCGCGGCATGTCGGCGTGGTGCCGGAACTG GCGATCGCCGGGCTTTCCACCTTCAAGAGCGTCAAGCGGCGCATGGAGAAGGTCGCCGAGGTCAACGGCGTGACCATCTACGACGACTTCGCCCATCACC CGACCGCCATCGCCACCACCCTCGACGGCCTGCGCAAGCAGGTCGGCACGACGCCGATCATCGCCATCATCGAGCCGCGCTCGAATTCGATGAAGCTCGG CGCGCATCGCGATGGGCTGGCCGAGTCGGTGGCGCTCGCCGATCAGGCGATCTGGTATGCGCCGGCCAATCTCGGCTGGGATCTGGCCGCGACCGTCGCC GGTTCGCCGGTACCGACCGCCGTCTGTGATTCGCTGGAGGCGATCATCGCCAAGGTCAAGGCCGACGCCACGCCGGGTACGCAGGTGGTGGTGATGAGCA ACGGCGGGTTTGGCGGGCTGCACGGCAAGTTGGCTGGCGCACTGGCGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGGTGGAAAACGCTTCGCGGTTTTCCACCCTACGGGGACCGTGGGTAGGGTGGAAATCGCCGCAGGCATTTCCACGCGAATGGCATCAGGAGCAAATTGA ATGAACGGACCGGAACGCATCACCCTGGCCATGACCGGCGCCTCCGGCGCGCAGTACGGCCTGCGCCTGCTCGACTGCCTGGTGCAGGAAGACCGTGAGG TGCACTTCCTGATCTCCAAGGCCGCGCAGCTGGTGATGGCCACCGAAACCGATGTGGTGCTGCCGGCAAAGCCGCAGGCCATGCAGGCGTTCCTCTCCGA GTACACCGGTGCCTCCGCCGGGCAGATTCGCGTGTTCGCCAAGGAGGACTGGATGGCCCCGCCGGCGTCCGGCTCCGGCGCACCGACCGCCATGGTGGTG GTGCCCTGTTCAACCGGCACGCTGTCGGCAATCGCCACCGGCGCCTGCAACAACCTGATCGAGCGTGCCGCCGACGTCACCCTCAAGGAGCGCCGCCAGC
|
|
| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLEAQGIELMQGYEPAHLQPAPDLVVVGNALSRGNPAVEYVLNKGMPYVSGPQWLADHVL QGRWVLAAAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFGISARLGDTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRTVPGEGLIIHPASETALKRVIGMGCWTPVQTTGEGGQWQARLLREDGSRFEVSFDGAVQGVVEWELTGRHNVNNALATLAAARHVGVVPEL AIAGLSTFKSVKRRMEKVAEVNGVTIYDDFAHHPTAIATTLDGLRKQVGTTPIIAIIEPRSNSMKLGAHRDGLAESVALADQAIWYAPANLGWDLAATVA GSPVPTAVCDSLEAIIAKVKADATPGTQVVVMSNGGFGGLHGKLAGALA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|