Pseudomonas sp. HMP271, DP64_RS10870
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCCAGCAAGGTGCTGGCCACACGCTTGAGGGTTTCGACGGTGGTGTAGCCGTTGACCAGCTGGCGTTGCGAGTTCGCCGCCGCCTCGCGTGCGTGCTGC GGGACCTGGAACAATGCGGGCTCGCGGCTCCAGTACCAGCCCACGATCAGCGCCGCCAGCAGAAGCAGCCCGACCACCACGGCAAGTGCCGACCACAGCG GGCTTCCCGCGCGCGAAGCGGTTGCCGTCGCACCGCCGCTCGAGCGGCCGAAACGGGCAAAGCGGTTCTTCCAGTCCAGCATGGGCAAAATGTCCTTCTC TTGGATTCAGAGGGTCTGACCGCCTGAGGCGGGCCGCGTTGCGGTAAGGATGCTCACTATAACGTAGCTCCCAGGCATCCTCTGCCGCAATTTGCGAACC ACTACCGCCTGCGGCAGCCTCCAGACCCGCACACCGGTGATAGCATGGCGCCACCACAAAACGGCGCCGCCCCCGAATGGCCAGCGCAACGGAAAGGCTC
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| DNA Sequence for Gene |
>DP64_RS10870
ATGGCGGACCAGGAAGAACTCAAGCAACACTTTGCCCAGCGCGTGATTCATCAGGCTCGCGAAGTGCTCGACGTCTGGCAGCAATTGCAGCGCGGCGAAT GGAGCGAGCGGCACCACAGCGCGCTCGACGACGCCACGCAACGCCTACGCCGCTTCGCCGAGCGTTTCGAGCAGCCCGAGCACAGCGCCCTGGCGATCGG CATCGAGGATTGCCTGGGCGATATCCGCGACAACCGCGGCCGGCTGTCCAGCGAGACCATCGCGACGCTCAGCCAACTGATCTACCGCCTGGCACGCACC GGACTGCGCCACAACGACCCGCTGACGCAGCCTTTCCTGCCGCCGCTGAGCAAACCGGTCTACCTGGCGCTGCAGAACGGCCAGCGAGCGGACTACCTGA TGCGTCAGCTGGAGTTCTTCAGCATGTCGGCCCAGGCTTTCGACAGCGAGGCGGCGTTTCGCGCCGCCATGCACCAGCGCCATCCCGCGGCGATCGTCAT GGACGTCGACTTCACCGGCCCCGGCGCCGGACTGCGACTGGCCGAGCAGGTCCAGCAGGGGCTGGAAGACAAGCTGCCGATCCTGTTCTTCAGCCACAGT GAAACCGATACCCCGACACGCCTGGCGGCCGTGCGCGCCGGCGGCCTGGAATTCTTCACCGGCACGCTGGACGCCTCAACCCTGCTGGAGAAGATCGAAA TCTTCACCCGCACCGCGCACAGCGAACCGATCCGCGTACTGATCGTCGACGACTCCCGCGCCCAGGCCACGCACACCGAACGCGTGCTGAACAACGCCGG CATCATCACGCGCATGCTGATCGAGCCGATCCAGGCCATCGGCGCACTAGCGGAGTTTCAGCCGGACCTGATCATCCTCGACATGTACATGCCCGACTGC ATGGGCACCGAACTGGCCAAGGTGATTCGCCAGCATGAACGCTACGTCAGCGTGCCGATCATCTACTTGTCGGCCGAGGACGATCTGGATAAGCAGCTCG ATGCGATGGGCGAAGGCGGCGACGACTTTCTTACCAAGCCGATCAAGCCGAGCCATCTGATCGCCACCGTGCGCACCCGCGCCGCTCGTGCCCGCAGCCT CAAGGCACGCATCGTGCGCGACAGCCTGACCGGCCTGTACAACCACACCCACAGCCTGCAACTGCTGGAAGACGCGCGCTTCCAAGCCCGCCGCGACAAT CGCCCGTTGAGCTTCGCCATGCTCGACATCGACCACTTCAAACGGGTCAACGACACCTACGGCCACCCGATGGGCGACCGGGTGATCCGCAGCCTGGCGC TGTTTCTCAAGCAGCGCCTGCGCAAGACCGACCACATCGGCCGCTATGGCGGCGAGGAGTTCGCCGTAGTGTTGCCGGATACGCCGGTGGAAGCGGCGTG CAAGGTGCTCAACGACATTCGCCAGCGCTTCGCCGAGCTGCGCTTTCCCGCACAGCCGCAAGACCTGAGCTGCACCTTCAGCTGCGGAATCAGCGAACTG AGCGCCGACACCGACGTCAAGACGCTCACCCAGCAGGCGGACGAGGCGCTATACCGCGCCAAACGCGGCGGCCGAAACCGGGTCGAACGCTTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGACCAGCCGCGCCTACCGGTTCTCAAAATCACGAGGCGGGCGCGGCTGTCACGCGAATGACATCAAATCGCCATATCTTGCTAGCCTTCCTGGCCTGC TCGAAGAGGCGATGATGCGCCTGAAGTCGCTCACCACGCTCAACACCCTCCTGCTCATCGCGGTTTGTCTGGCTCTCGGAGCGACGCTCTGGTGGTCAGA GCGGGCAATGGAGCGACCCTACCAGCTCATGGCGCGTTACCTGGGATTGTCCCAGCAGTTCCAGCACCAAGCCGCGGAGAACATTAGCGCCTACCTGGCC AGCGGCGATGCCCTGCGCCACAGCCAGGCGCAAAAAGCACTGGAAACGCTGCAGCAGGACATCGCCGGATTACCGGCCGGGTTCGCCGAGCAGCTGCAGC CCAGTCTGGACGAGCTGAGTCGTTTCACCTCCAGCGATCTGCTCGCCGCTGGCAAGCTGGCGGGCGATCCACAGGGTTTGCTGCTGCAGGCCGAGCGCGA
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| Amino Acid Sequence |
>diguanylate cyclase
MADQEELKQHFAQRVIHQAREVLDVWQQLQRGEWSERHHSALDDATQRLRRFAERFEQPEHSALAIGIEDCLGDIRDNRGRLSSETIATLSQLIYRLART GLRHNDPLTQPFLPPLSKPVYLALQNGQRADYLMRQLEFFSMSAQAFDSEAAFRAAMHQRHPAAIVMDVDFTGPGAGLRLAEQVQQGLEDKLPILFFSHS ETDTPTRLAAVRAGGLEFFTGTLDASTLLEKIEIFTRTAHSEPIRVLIVDDSRAQATHTERVLNNAGIITRMLIEPIQAIGALAEFQPDLIILDMYMPDC MGTELAKVIRQHERYVSVPIIYLSAEDDLDKQLDAMGEGGDDFLTKPIKPSHLIATVRTRAARARSLKARIVRDSLTGLYNHTHSLQLLEDARFQARRDN RPLSFAMLDIDHFKRVNDTYGHPMGDRVIRSLALFLKQRLRKTDHIGRYGGEEFAVVLPDTPVEAACKVLNDIRQRFAELRFPAQPQDLSCTFSCGISEL SADTDVKTLTQQADEALYRAKRGGRNRVERF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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