Pseudomonas sp. HMP271, DP64_RS08490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGCAAGCGCAACTTCTCGAGAACGTCTGGCCGGCGCTTGCGCCATTGCTCGCCCCGCAGCGCTGAACGCCGTCTGCCTGAGGCCCTGCGAGCCTCTT GCGCTGGCGCGAGCGCGCAGCTACTGTCGCGCCCCTCGAACGGGAGCACTCGATGCCGCGCTCAGCCAAGACCCTGTATGCCTATCGACTCATCGTGCCG GACGAGCAGTTCGATCTGTTCGCCTGCCGCGAGAATCGTCTGCATCTGGCGCTGCGCCAGCTGGAGCTGAGCGGTAATGCGGATCGCACACTGTGCGGGG GCCTGCTGCCAGCGCAGCCGCGCTGGCAGGACCTGCAGCGCGAGACGCTGAAGGACCGGCGTCTGTGTCCGTCCTGCCTGCAGTTGCTGGATGCGCGCAG CAGGGGCCTTCTGTCCGCGGTAAGTGCCTGGTAGGCGCCGGCGACGTCGGCTTCGAGTACAATCGCCGTCAATTCGATCAATCAGCCAAGGGTTTCCGTA
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| DNA Sequence for Gene |
>DP64_RS08490
ATGCTTTCGCGTGCGTCTGCTGTCGCCTCCTGTTTGTCTCTTGCGGCTTTGCTGGCGGCTGGCCAGAGCGTCGCGCTGGAGCTGCCTTTGCCGCCTGAGG GCGAAGATGTAGTCGGCCAGATCCGCGTGATCAAGGCGAAATACGAAGACACCTTCGCCGCGATCGCCGAAACCAACGATCTGGGCTATTCCGAACTGGT GGCCGCCAATCCGGGCGTGGATCCATGGCTGCCGGGCGAGGGGACCGACATCATCCTGCCGACGCGCTTCATCCTGCCGCCAGGGCCGCGCGAGGGTATC GTGATCAACATCGCCGAGTACCGCATGTACTACTACCCGGCCGGCGGCAGCGTCGTCCACACCTATCCGCTGGGCATCGGGCGCGAAGGCTGGGGTTCGC CTGTAGGCAGTACGCGTATTTCCGCCATGACCGCCAACCCGGCATGGTATCCGCCCAAGTCCATTCGCGAAGAGCACGCGGCGGATGGCGATCCGTTGCC CACGGTGGTGCCGCCGGGACCGGATAACCCGCTGGGCCCGTACAAGATGAGTCTGGCCATCCCGGGCTACCTGATTCATGGCTCGAATAAGAAGTTCGGC ATCGGCATGCGCGTCAGCCACGGCTGTTTCCGCATGCTGAACAACAACGTTCTCGAGCTGTCGCGCATGGTCAAGGTGGGAACGCCGGTGCGCATTATCG ACGAGCCGTACAAGTTCGGCGTGAGCGACGGTAAGGTCTACCTGGAGGCCCATGCGCCGCTGGAAGACGAAGAGAAGAAACTGACGCTGATGGACAAGCA CGCCGTAGTCGTCAATACGCTGCTCAAGCGCGACGAGCAGATGCGCACTCTGCATCTTGATTGGGAGATGATCCGGGATATCGTTGCTGGCGAAGACGGT TTGCCGATCGAGATTGCCGATCAGCAATCGGTATCCATAGCCAGTCATGAAGAGCAAGTTTTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCATTAAGCCCCGTGGCGTTGTCCGCGGGGCGTATTGCGACAAATAAAAAAGCCGACCTTGTAGGTCGGCTTTTTTTGTTGCCTTGAAGCTTACTTGCGG CTGGCGCGATCCAGCATACGCAGAGCGCGCTCGTTCGCTTCGTCAGCGGTCTGCTGAGCCTTCTGAGCAGCAGCCAGGGCTTCGTCAGCCTTGCTGTAGG CTTCGTCGGCGCGAGCCTGAGCGCGGGCAGCGGCGTCTTCGGTAGCAGTCAGACGGGCTTCGCTTTCTTTGGTCATGCTGTTGCTGCAACCGGTAGCCAG AACTGCGGCCAGAGCCAGAGCAGAGAATTTCAGAACGTTGTTCATCGTGTTCCCCTTAAGGTGGAAATCCATAAGCAACTTCCGTTATGGAAAGTTTGCG CGCACATACTACCTGTAACTTCGTTTAAGTAAACCGAGTCGACGAGCTGCACGAGCGTTTTTTTGGAAAACTCCGGCAGCCCCTCGGCCCCTCGACTGCA
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| Amino Acid Sequence |
>transpeptidase
MLSRASAVASCLSLAALLAAGQSVALELPLPPEGEDVVGQIRVIKAKYEDTFAAIAETNDLGYSELVAANPGVDPWLPGEGTDIILPTRFILPPGPREGI VINIAEYRMYYYPAGGSVVHTYPLGIGREGWGSPVGSTRISAMTANPAWYPPKSIREEHAADGDPLPTVVPPGPDNPLGPYKMSLAIPGYLIHGSNKKFG IGMRVSHGCFRMLNNNVLELSRMVKVGTPVRIIDEPYKFGVSDGKVYLEAHAPLEDEEKKLTLMDKHAVVVNTLLKRDEQMRTLHLDWEMIRDIVAGEDG LPIEIADQQSVSIASHEEQVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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