Pseudomonas sp. HMP271, DP64_RS04655

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_4, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGTGCTAAGGATAGCCGTCCTGCCGATGCAGCCCCAAGCCCCTGCCGCTGGGTCAGTCGTCGGCGATCAGATTGGCGCGGTCGTCTTTTGCGCCTGCCGC GATCAGATGTTCGGCCTGTTCTTCGGGCACATGGATGCTGGTGCCGTCGATGTGCAGGACCGACATGCGCGCCTGCGGATCGGTGCTGATACGGGCATCG GCGATGGCGCAGCGGTGCGTGTGGCCGGCGATCACGGCGGTGCAAGTGCCGCTGGTAGTGTCGATTTGAACGCTCATATCGGGTCTCCTCAGGTGACCGG TGATGCATTGGACCGTGGCTGGTTCTCTTCGGACCGTGGATCCCGGCGCCGGGTTGTATGTGTCAGGGAAAAAGATGCTGAGTTGTTACGATATAACGTG CTAGATTCTCTCGCCCACACCAACGCGCCTGCCTATTGGAAGAGCCGGCGTGCCGTCTTTTCGCGGTTCTGCAAGCAACCGTCACAGTATGGAGAGTCAC
DNA Sequence for Gene
>DP64_RS04655
ATGAAATCGAAGCTTCACCCTCTGGCCTGGGCCATCGGTCTGGCGCTGCCGGCGTCCGTCTGGGGCGCCGATCCGCTCGAACTGCAACCGGTGGTGGTGA GCGCCAGCGGGCTGGATAGACAGAGCCACGAGATGACCACGCCGGCCGCGGTCATGGAGGGTGACGAACTGGTGCTGCGCCGCGAGGCGACCCTCGGTGA AACGTTGGAAAGCCTACCCGGCGTGCGTTCCAGCAGCTTCGGCGCCGGTGTGGGCCGGCCGGTGATTCGCGGGCTGGATGGCGCGCGAGTCAAGGTACTG AGCGATGGTGTGGAGCTGCTCGATGCATCGACCATCAGCCCCGACCATGCGGTGTCCAGCGAACCGCTGCTGGCCGAGCGAATCGAGGTGCTCAAGGGGC CGGCTGCGTTGCTGTACGGCGGTGGTGCCATCGGCGGCGTGGTCAACGTTATCGACCGGAAGATTCCGATCTACGTCCCGGAGAAAGGCTACGAAGGCGC GCTCGAACTGCGCGCCAACAGCGTGGCAAACGAAGGTGCAGGTGTGTTCGGCATCACCGCTGGCAGCGGCAACTTCGCCGTGCGCGCCGAAGGCACCAAG CGCCAGGCCGACGAGTACGAGATACCCGGATCGCCTAACAAGCAGGCCGGCTCCTACAACGACACCGACAGCTTCACCCTGGGCGCCAGCTACATCGGCG AGCGCGGCTATCTGGGCGCGGCCTACGGCGAACAGAACAACCGCTACGGGCTGCTGGCTCACGAGCATGCCGACTGTCACACCCACGGCAGCGATTGGCA CTGCGGCGGCCATGACGATCATGACGACGAGCACGACCATGATCACGAAGGCGCGGTGCCCTACGTCGACATGCGGCAGAAACGTTGGGACCTGCGTGGC GAGCTCAGCGACCCGCTGCCGGGCTTCGCGCTGGCACGCCTGCGCGTCGGTCACAGCAACTATCAGCACGAGGAGATCGAAGGCGGCGAAGTGGGCACCC GTTTCACCAATGACGCCACCGATGCGCGCCTGGAGCTCACGCACCAACCGCTGTTCGGCTGGCGCGGTGTGCTCGGCGCGCAGGCCCTGCGGCGTGACTT CGAGGCGCTCGGCGAGGAGGCCTACATACCGCAGACGCTGACGCGCAACCACGGCCTGTTCCTGCTCGAGGAGTACACCGCCGGGGCCTGGCGTTACGAG CTCGGTCTGCGTCACGAATGGCAGGACATCGACGCCGAGGGCCGCCCGGATACCGATCACCGCGGCACGTCCATGTCCGCCGGCGCGGTGTGGACGTTCG CCCCGCAGTACTCGCTGGGCTTCTCGCTGTCGCGCTCGCAGCGCCTGCCCAGCGCCGAGGAGCTGTACGCCAACGGCCCGCATGCCGCCACGCGTACCGT CGAGCTGGGTAATCTCGATCTGGAAGAGGAAACCTCGCACAACGCCGAGCTGACTCTGCGCAAATTCGCCGGGCGCACCACCTTCAGCTTCAGCCTGTTC CGTAATCAGGTGGATGACTTTATCTATGCCGCGGACACCGGCCACGATATCGGCGGCGGCTACCGTGAAATCGAATACCGCCAGCAGGATGCGGTGCTTG CCGGCGCCGAAGGCGAGGTGCGTTTTCAGGCCACCGATGCCACCGCCTTCACCCTGTTCGGCGACCATGTGCGCGGCAAGTTGCGCGATGGTGGCGGCGA CCTGCCGCGCATTCCGGCTGACCGCCTCGGCGTGCGGCTGGACCAGAGCTTCACCCCTGCGCTCAGCGGCCAGCTGGAGTTCTACCGCGTGCAGCGACAG GACGAACTGGCCGATTACGAAAGCGAAACCGGCGGCTACAACATGCTCGGCGCCAGCCTGGGTTACAGCGGCTCGCTAGACCAGACCGACTACCTGCTCT ATCTGAAGGCCAACAACCTGCTCGATGAGAAGGCGCGTCAGCACACCTCCTTCATCAAGGACGAGGTGCTGTTGCCGGGCCGCAACCTGACCGTGGGCGT GCGGCTGGCATTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCTTCGACGCTCACGCAGACGGAGCGGCTGCCTCGTCGATCTCGCAGCCTTTGAGGACCAGGCGGATGATGGTTTCGGCGGCGGCGTCATAGTCGGCATC GTCGAGCTGCGCCTTGCCGGTGACGGTGCTGATCTGCCAGTCGAAGTCGGCATAGGTCTGCGTCGCCGCCCAGATACTGAACAGCAAGTGATGTGGGTCG ATCCGGGTCATCAGGCCCTGATCGATCCAGCGCTGGATGCAGGCGATGTTGTGCGCCGCCTGTGCATTGAGCTGGGCGGTGCGTTCCGGCGACAGGTGCG GGGCGCCATGCATGATCTCGCTGGCAAAGACCTTCGAGGCGCAGGCGTGATCGCGCGAGATACGGATCTTGGTGCGGATGTAGGCGCGCAGCACATCTGC CGGTTGACCCGGCTGGTTGAACGGCGCCGAAGCCTCCAGCAGCGGCTCGACGATGCTCTCCAGCACCTCCCGATACAGATTTTCCTTCGACTTGAAGTAG
Amino Acid Sequence
>TonB-dependent receptor
MKSKLHPLAWAIGLALPASVWGADPLELQPVVVSASGLDRQSHEMTTPAAVMEGDELVLRREATLGETLESLPGVRSSSFGAGVGRPVIRGLDGARVKVL SDGVELLDASTISPDHAVSSEPLLAERIEVLKGPAALLYGGGAIGGVVNVIDRKIPIYVPEKGYEGALELRANSVANEGAGVFGITAGSGNFAVRAEGTK RQADEYEIPGSPNKQAGSYNDTDSFTLGASYIGERGYLGAAYGEQNNRYGLLAHEHADCHTHGSDWHCGGHDDHDDEHDHDHEGAVPYVDMRQKRWDLRG ELSDPLPGFALARLRVGHSNYQHEEIEGGEVGTRFTNDATDARLELTHQPLFGWRGVLGAQALRRDFEALGEEAYIPQTLTRNHGLFLLEEYTAGAWRYE LGLRHEWQDIDAEGRPDTDHRGTSMSAGAVWTFAPQYSLGFSLSRSQRLPSAEELYANGPHAATRTVELGNLDLEEETSHNAELTLRKFAGRTTFSFSLF RNQVDDFIYAADTGHDIGGGYREIEYRQQDAVLAGAEGEVRFQATDATAFTLFGDHVRGKLRDGGGDLPRIPADRLGVRLDQSFTPALSGQLEFYRVQRQ DELADYESETGGYNMLGASLGYSGSLDQTDYLLYLKANNLLDEKARQHTSFIKDEVLLPGRNLTVGVRLAF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site