Pseudomonas sp. HMP271, DP64_RS04590

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02163
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50156
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 164 188 6.4E-54
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 103 115 6.4E-54
Pfam PF13180 PDZ domain IPR001478 PDZ domain 381 461 3.4E-10
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 376 469 2.5E-17
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 124 144 6.4E-54
Gene3D G3DSA:2.40.10.120 - - - 27 259 1.1E-84
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 261 369 1.6E-27
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 235 369 7.9E-9
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 220 237 6.4E-54
CDD cd00987 PDZ_serine_protease - - 266 355 2.11821E-25
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 306 318 6.4E-54
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 198 215 6.4E-54
Pfam PF13180 PDZ domain IPR001478 PDZ domain 268 356 8.2E-16
Pfam PF13365 Trypsin-like peptidase domain - - 94 227 9.4E-35
SMART SM00228 pdz_new IPR001478 PDZ domain 379 458 1.6E-9
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 235 360 1.89E-22
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 28 465 0.0
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 29 356 5.6E-98
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 28 259 7.3E-99
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 380 467 9.2E-14
CDD cd00987 PDZ_serine_protease - - 380 465 1.32805E-17
SMART SM00228 pdz_new IPR001478 PDZ domain 266 348 1.4E-15
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 8 275 4.05E-69

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.