Pseudomonas sp. HMP271, DP64_RS03185
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGGTTCCGAAGGCGCTGATCGACAACGAAGTCAATCGTCTGCGTGTGCAGGCGGTCCAGCAGTTCGGTGGCAACATCAAGCCTGACCAGCTGCCGGCA GAGCTGTTCCAGGAGCAGGCCAAGCGCCGCGTTGTTCTGGGTCTGATCGTCGCTGAAGTCGTCAAGCAGAAAGAGCTGAAGCCCGACGAGGCGCGCGTTC GCGAGCTCATCGAGGAAATGGCGTCGGCCTACCAAGAGCCTGAGCAGGTCGTTGCGTGGTACTACAAGAACAACGAGCAACTGAACGAAGTTCGTTCGGT TGTGCTCGAAGAACAAGTTGTAGATACTGTTCTGCAGCAGGCGAAAGTGACCGACAAATCGGTCTCTTACGAAGAAGCCATCAAGCCTGCGGAAGCTCCG CAAGCAGCCTGATCTTCAAAACGTTCGAGTGCACAGACACAAGCCAGCCCTCGTGCTGGCTTGTGTCTTTTGAGGCATGACAAGGGAGTATCGTTGGAAC
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| DNA Sequence for Gene |
>DP64_RS03185
ATGTCCCGCAATCCTTTTATGCAAGTTCCGGACATTCAGGCCGCTGGCGGTCTGGTCCCGATGGTAATCGAACAGTCCGCACGCGGCGAGCGGGCTTATG ACATCTACTCTCGCCTCCTGAAGGAGCGGGTGATCTTCATGGTTGGCCAAGTCGAGGACTACATGGCCAACCTGATCGTGGCCCAGTTGTTGTTCCTCGA GGCAGAAAATCCCGAAAAGGACATCCACCTGTATATCAACTCGCCGGGCGGTTCGGTCACCGCAGGCATGTCGATCTACGACACCATGCAGTTCATCAAA CCGGATGTTTCAACGATTTGCATCGGGCAGGCCTGTTCCATGGGCGCTCTGCTGTTGACTGGCGGTGCTGCCGGCAAGCGTTACTGCCTGCCGCATTCAC GGATGATGATCCACCAGCCGTTGGGCGGTTTTCAGGGGCAGGCATCTGACATCGAGATTCACGCCCGCGAGATCCTTACCATCCGCGAGCGGCTGAACAA GGTGCTTGCGCACCACACCGGTCAGCCGATGGATGTCATTGCCCGAGATACCGACCGCGACAACTTCATGAGTGGTGATGAGGCCGTTAAGTACGGGCTG ATCGACCAGGTTCTGACGCAGCGCCAGCTGGCTGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTCCACAGCCCGCGATATGCGGCTGCTCCGTGGGCTTGAAAAAGCCCACGATTGCCTTCATCTTGTGTTTCAAGCCTTCCCGATTGGATTGTTCGAATG ACTGACACCCGCAACGGCGAGGATTCCGGCAAACTGCTCTATTGCTCCTTCTGTGGCAAAAGCCAGCACGAAGTGCGCAAGTTGATCGCTGGTCCCTCCG TTTTCATCTGCGACGAGTGCGTCGACCTGTGCAATGACATCATCCGCGAGGAGGTGCAGGAAGCCCAGGCGGAAAGTAGCGCGCACAAGCTGCCTGCGCC CAAGGAAATCAGCGGCATTCTTGACCAGTACGTCATTGGCCAGGAGCGCGCGAAGAAGATCCTGGCGGTAGCGGTTTACAATCACTACAAACGCCTCAAT CAGCGCGACAAAAAAGAAGAAGTCGAACTGGGCAAGAGCAACATTCTGCTGATCGGGCCGACGGGCTCGGGCAAGACGCTGCTGGCCGAGACTCTGGCTC
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| Amino Acid Sequence |
>Clp protease ClpP
MSRNPFMQVPDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLIVAQLLFLEAENPEKDIHLYINSPGGSVTAGMSIYDTMQFIK PDVSTICIGQACSMGALLLTGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREILTIRERLNKVLAHHTGQPMDVIARDTDRDNFMSGDEAVKYGL IDQVLTQRQLAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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