Pseudomonas sp. HMP271, DP64_RS02800
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGGGCAACTGCAACAGACCATCCGTCACGGTCGTAACGGGCAGATGCCGGCGCAGCAGCAGTACCTGGGCAATGACAAGGTACACCTGCTCGCCGCTT ACGTTTACAGCCTGTCACAAAAACCGGAACAACTCGCCCGCCAGTGAGTCTCAAGGGGCGGTACACTCGGACCGCCCGCTTGACCTTGTCCCGGCACAAG TTTTTCTGCCCTGCGACGTTCTGTCGCAGGCGCTTCAGCTGACCGCACTACCCCCCTTCCACGCTCACGTCCTAAGCTTTGCCGATTGGTCCGCCGATCA CCGCGCAACTGCGCGCAAATGCCGGAGATCAGCGCACCGGAGCGGCGCAAAAACGACCTTGTAAAACATCTGGAAAACGCTTGGATTCTGGGTTTTGACG CGTTGCGAGCGCCCCGCAGCCGTTTGCATTGCCCCCCTGCTTTATCCATACTCGCCGCCGTTTTTGCCTTTGAAAATGCCATTAGCGTGGAAGCCTTTGC
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| DNA Sequence for Gene |
>DP64_RS02800
ATGAGCACAGCAATAAGTGAGTCTGCTTATAACTATAAGGTGGTCCGCCAATTCGCCGTCATGACGGTGATCTGGGGGATCGTGGGGATGGGTCTGGGCG TGCTGATTGCCGCACAATTGGTGTGGCCTTCGCTGAACTTCGATCTACCGTGGACAAGCTTCGGTCGACTGCGGCCGCTGCATACCAACGCGGTGATTTT CGCCTTCGGCGGTAGCGCGCTGTTTGCCACGTCCTATTACGTGGTGCAGCGCACCTGCCAAGCGCGTCTGTTCTCCGACAGTCTCGCAGCCTTCACCTTC TGGGGTTGGCAGGCGGTGATCGTCCTCGCGGTCATCACGTTGCCGCAGGGCTTCACCAGCTCCAAGGAATACGCCGAGCTGGAATGGCCAATCGACATTC TCCTGGCCATCGTCTGGGTTTCCTACGCGCTGGTGTTTTTCGGCACCATCATGAAGCGCAAGGCCAAGCACATCTATGTGGGTAACTGGTTCTTCGGCGG CTTCATCCTGGTCACGGCGATGCTGCACATCGTCAACAACCTGGAAATCCCGGTCAGCTGGTTCAAGTCCTACTCGATCTATTCGGGCGCTACCGATGCG ATGGTGCAGTGGTGGTACGGTCACAACGCCGTGGGCTTCTTCCTGACCACCGGCTTCCTCGGGATGATGTACTACTTCGTGCCGAAGCAGGCCGAGCGCC CGGTGTACTCCTATCGCCTGTCGATCGTGCACTTCTGGGCGCTGATCACCCTTTATATCTGGGCCGGTCCGCACCACCTGCACTACACCGCATTGCCGGA CTGGGCACAGAGCCTGGGCATGGTGATGTCGATCATCCTGCTGGCACCGAGCTGGGGCGGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCAT AAGCTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTCTCCCTGGCGTTCTACGGCATGTCGACCTTCGAAGGCCCGATGATGGCGATCAAGACCGTCA ACGCCCTGTCCCACTACACCGACTGGACCATCGGCCACGTACACGCCGGCGCCCTCGGCTGGGTGGCGATGATCACCATCGGTTCGATGTATCACCTGAT CCCGAAGGTCTTCGGTCGCGAGCAGATGCACAGCATCGGCCTGATCAACGCGCACTTCTGGCTGGCCACGATCGGCACCGTGCTCTACATCGCCTCGATG TGGGTCAACGGTATCACCCAGGGTCTGATGTGGCGCGCGGTCAACGAAGACGGCACGCTCACCTACTCCTTCGTCGAAGCACTGGAAGCCAGTCACCCCG GGTTCATCGTCCGCGCCCTGGGCGGTGCATTCTTCCTCGCCGGCATGCTGCTGATGGCCTACAACGCCTGGCGCACCATTCGCGCCGCCAAGCCAGCCCA GTACGACGCTGCCGCGCAGATCGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAATCGAATCTAAATGAAACAGCACGAGAAACTAGAGAAGAACATTGGTCTGCTGACCCTGTTCATGATCCTGGCAGTGAGCATCGGCGGTCTGACCCA AATCGTTCCGCTGTTCTTCCAAGATGCGGTCAACGAGCCGGTCGAGGGCATGAAGCCCTACACCGCGCTGCAGCTCGAAGGTCGTGACCTGTATATCCGC GAAGGCTGCGTCGGTTGCCACTCGCAGATGGTCCGCCCGTTCCGCGCCGAGACCGAACGCTACGGCCACTATTCCGTCGCGGGTGAAAGCGTCTACGACC ATCCGTTCCTGTGGGGCTCCAAGCGCACCGGCCCGGACCTGGCCCGCGTCGGCGGCCGCTACTCCGACGACTGGCACCGTGCCCACCTGTTCAACCCGCG CAACGTGGTACCGGAATCGAAGATGCCGTCCTACCCGTGGCTGGTCGAGAGCACCCTGGATGGCAAGCACACCGCCCGGAAGATGGAAGCGCTGCGCACC
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| Amino Acid Sequence |
>cbb3-type cytochrome c oxidase subunit I
MSTAISESAYNYKVVRQFAVMTVIWGIVGMGLGVLIAAQLVWPSLNFDLPWTSFGRLRPLHTNAVIFAFGGSALFATSYYVVQRTCQARLFSDSLAAFTF WGWQAVIVLAVITLPQGFTSSKEYAELEWPIDILLAIVWVSYALVFFGTIMKRKAKHIYVGNWFFGGFILVTAMLHIVNNLEIPVSWFKSYSIYSGATDA MVQWWYGHNAVGFFLTTGFLGMMYYFVPKQAERPVYSYRLSIVHFWALITLYIWAGPHHLHYTALPDWAQSLGMVMSIILLAPSWGGMINGMMTLSGAWH KLRTDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMITIGSMYHLIPKVFGREQMHSIGLINAHFWLATIGTVLYIASM WVNGITQGLMWRAVNEDGTLTYSFVEALEASHPGFIVRALGGAFFLAGMLLMAYNAWRTIRAAKPAQYDAAAQIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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