Pseudomonas sp. HMP271, DP64_RS15345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCGTCTCATTCGAAACTTTTTCTCGTGAAGGAAAGACCGGCAAAAGCGAAACCGTTTCGATTCAAAAAGAACCCCTGGGTAACGGCACGACCCTGCTG TTGATCAGCAACAGCATTGAGCTCCTGCAGAACCTGCCTGACTTGGCGCCACCATTCCCCTGGGATGTGTTCCCGGAGGTAGATGCAGACGGGCTAGGAG CCCTACAAGGCAGCCTCGAACACTGGTGGAACCACTACTGGTGGCCTTACTGGATGAGCCTTACTCCGCAGCAACATGAGCATTGGCTGGGTAATGCCAG CCATCGGCATGGCTGGTGCGAGTACATCAGGCTACAAGCCGACCTCAACAACAATGAAGCGCAATAGGCGCCCCTGCCATTCATGGAAGAGCAAATCAGT GTGCCCCTAAGCGAGTTTTCACTATTTGTTGGTGCGCTCAACGCTCCCATATTTCTTCTAGCCAACAGACGCTGACTGCGCACTCAAGGAATGAGGCCTG
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| DNA Sequence for Gene |
>DP64_RS15345
ATGTCCTTCAACCATTACTACCAGAGCGAACTGACCGCCCTGCGCCAGCTGGGCAAGCGCTTCGCCGAGCGCAGCCCGGCGCTCGCGCCGTTCCTCGGCC AGGCCGGGCGCGACCCGGATGTCGAGCGTCTGCTCGAAGGTTTCGCCTTTCTCACCGGGCGGCTGCGGCAGAAGCTCGATGACGAGCTGCCGGAGCTGAC CCACTCGCTGATGCATCTGCTGTGGCCGAACTACATGCGTCCGCTGCCGGCTTTCAGCATGCTGCAGTTCGATCCGCTGAAACGCCCCGGCCCGGCGCTG ACGGTGCCGCGCAACACCCCGGTGGAATCCAATCCAGTGCAGGGCGTCAGCTGCTGTTTTCGTACCGCCTACGCCACCGAGGTGCTGCCGCTGGCGTTGC AGGCGCTGGAGTATTCGGCCAAGGGCACCGGCGCGCTGCTCAGCCTGCGCCTGCAGATGAGCGCCGATGGCCATCTCGGCGAGATCGGTCTCAACCATCT GCGCCTGCACCTGGCCGGCGAGCCCTATATCAGCCAGCTGCTCTACCTGAGCCTGTTGCGGCATCTGGGCGGCATAGAACTGGTGCCGCTGAACGAGCAG GGTCATCCGCTGACAGGTCCCGATGGTCGGCCGCTGGCCCCCTTGCAGCTCAACGCCAAGCAGGTCGAACCGGTGGGTTTCGCTGAAGATGAGGCGCTGA TTCCCTACCCCCTCAACACATTCCGCGGTTATCGCTACCTGCAGGAATATTTCGCCTTCCCGGACAAGTTTCTCTTCGTCGACCTCAAGGGCCTGGAGAT CATTCAGCGCATCCCCGAAGATTTGCTCAAGCAGGCCCGCGGCCTGGAGCTGCGCTTCGACATTCACAAGGCCGGCGTGCAGCGCATCCGCCCGACGCTG GACAACGTGCGCCTGTACTGTACGCCGGTGGTCAACCTGTTCCCGCACGATGCCATCCCGATCCGCCTGGACGGCAAGCAGGACCAGTACCTGCTGCTGC CGGCCGAGTACGACGCGCAGCAATGCGGCGTGTTCTCGGTGGACCGGGTCACCGGCTGGAAACCCGGCGGCATGGGCTACGAAGAGTACGTGCCGTTCGA ATCCTTCGAGCATGACCCCAGTTTCGATGTGCCGGTGGCGCGCCCGCACTACAGCGTGCGCCAGCAACCTTCGCTGCTGGGCGAAGGCCAGGAAACCTGG CTCAGCTTCGGTCTGCGCAACCTTGACCAGCACGAGACGCTGTCCATCGAGCTGACCTGCACCAACCAGAACCTGCCGCGCCAGCTGAAGCTCGGCGACA TCTGCAAGCCCTGCGAAGACACCCCGGAATTTCTCAGCTTCCGCAATATCTCGGCGGTCACCCCGAGCTACGCGCCGCCGCTGCAGCGCGACTATCTGTG GAAGCTGATCAGCAACATGTCGCTGAACTACCTGTCGCTGGCCAACGTCGAGGCGCTCAAGGTGATCCTCGAGACCTACGACCTACCACGCTATTACGAC AAGCACGCCGAGAACGTCAGCCGGCGGCGCCTCGGCGGCCTGACTCACATCGCCCACCAGCACGTCGATCGCCTGCATCGCGGGCTGCCGGTGCGTGGCG TACGTACCGAACTGACCATGAACCAGGACGGCTTCATTGGTGAGGGCGATCTGTTCCTCTTCGCCTCGGTGCTCAACGAATTCTTCGCCCTCTACGCCAG CCTCAACTCGTATCACGAGCTGCGCGTGCAGAGCACACAGGGAGAGGTGTACCAATGGACGCCGCGCATGGGTCAGCAACCGCTGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACCGCTCAACCGCGGCATCCGCGAGTACAGCCTGTTCCAGGGTGTGCTGCTGGTGCTCGACCGCCTGCGCCAGCTCAATCCCGGTCTGGATGACGAGGC GCTCTACGAGCGCCTGGAATTCCAGGCCAACCCGAGCCTGGGCTTTCCCGGCAGTGATATTGAGCAGGTGCAGTTCTTCCAGGAGCACGGCGAGTGGCGC GCGCGCCTGCGCATCAACCTGGTCAGCCTGTTCGGCGCTGGCTCGCCGCTGCCGGCCTTCTACGGCGAACAAGCGCTTGGCGACGATGAAGACGGCAACC CGACCCGCGACTTCCTCGACCTGTTCAACAACCGCCTGCAGCGCCTGCTGCTGCCGATCTGGCAAAAGTACCGATACCGCGCCCGCTTCACCAGCGGCGC CCATGACCCCTTCTCGGAGCAGCTGTTCGCCCTGGTCGGACTCAGCGGCGAGGCCATCCGTAGCGCGCCGGAGCTGAACTGGAAACGCCTGCTGCCCTAT
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| Amino Acid Sequence |
>type VI secretion protein
MSFNHYYQSELTALRQLGKRFAERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPNYMRPLPAFSMLQFDPLKRPGPAL TVPRNTPVESNPVQGVSCCFRTAYATEVLPLALQALEYSAKGTGALLSLRLQMSADGHLGEIGLNHLRLHLAGEPYISQLLYLSLLRHLGGIELVPLNEQ GHPLTGPDGRPLAPLQLNAKQVEPVGFAEDEALIPYPLNTFRGYRYLQEYFAFPDKFLFVDLKGLEIIQRIPEDLLKQARGLELRFDIHKAGVQRIRPTL DNVRLYCTPVVNLFPHDAIPIRLDGKQDQYLLLPAEYDAQQCGVFSVDRVTGWKPGGMGYEEYVPFESFEHDPSFDVPVARPHYSVRQQPSLLGEGQETW LSFGLRNLDQHETLSIELTCTNQNLPRQLKLGDICKPCEDTPEFLSFRNISAVTPSYAPPLQRDYLWKLISNMSLNYLSLANVEALKVILETYDLPRYYD KHAENVSRRRLGGLTHIAHQHVDRLHRGLPVRGVRTELTMNQDGFIGEGDLFLFASVLNEFFALYASLNSYHELRVQSTQGEVYQWTPRMGQQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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