Pseudomonas sp. HMP271, DP64_RS15315

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_14, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCTCAAGCAGAGCGTGGCGGGCCTACAGCAGAGCCTGCGCACCCGCAGCGAGCTGAAGAACGAGCTGCGCCTGGCGTTGACCACCGTGAAGAGCGCCGGC AACAACCCGCTCAAGCACAGCGCCGATGCGAGCGAGGCCCTGAACGCCCTTTTGCGCGGTGGCAAACCCGGCCAGCTCAGCGCCGAACAGGCCGTCGGCC GAGCCTTTCGTGATCTGCAGGCGCATCAGGTGGCACTGCTGGCGGCCAGCCGCGCCGCCGTTCACGCGATGTTCGAACAGCTGGCGCCGGAGCAGCTGGC GCTGCGCTTCGAACGCGAAGGCCGCAAACCCCTGCTCGCCACCGCCGGCAGTCGCTGGCGTGCCTATCGCCGCCTGCATCACAGCCTCGGCCAGGATGCC GACTGGAGCGAACGCCTGTTCGCCCGCGACTTCGCGAAGACCTATGAGGAGCAGGTGCGCCTGATCGCCACGCTCGATTCAACCCATCAAGGATGATCCC
DNA Sequence for Gene
>DP64_RS15315
ATGCCTCGTCGCATCACCCTGGCCATGCTGGCCTCGCTGCTCGTGCTGGGCGGCTGCTCGGCACTGTCGCCGTACTCCAAGCTGACCAAGCTGGACCTCG AGCTGCACGGCAGCGACCGTCTCAACCCCGACCTCAACGGCCGGCCTTCGCCGATCGTGCTGCGCCTGCTGGAGCTCAAGCATCCGGTGGCGTTCGAAAA CGGCGACTTCTTCGCCCTCTACCAGCGGCCCAAGGAAGCACTGGCGCCGGACCTGGTGACCTCCGAGGAACTGGAACTGCGTCCCGGCGAAAGCCGTGAG CTGAAGCTCTCCGTGCAGGACGGCAGCCGCTACGTCGGCGTGCTGGCCGCCTACCGCGACCTGCCGGAAGCCAGCTGGCGCTACGTCATCGCCGTGCCGC CGCAAGAGCGCACCCGCATCGCCCTGAGCCTGGACGAGCGCGGCATCGCGCTGTTCGACCCACTCGCCGAAGAAGGAAAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCATGAGCCTGCACAAGGTTGTCTGGCAGGAAGGCATGCTGCTGCGCCCGCAGCACTTCCAGCAAAGCGATCGATACTACGATCACCAACTCAAGGCGCG CACCCAGAAGCTGAGCAGCTATGCCTGGGGATTCTTCAATTTGGAGATCGACCGCCAGTTCCTCAACATGGGCAAGCTGGTGCTCAGCCAGGCCAGCGGC ATCCTCCCGGACGGGACCCTGTTCGAGCTGGGCAGCGAGCGCGAGCCTCTGGCTCTGGACATCCCGCCGAATACCGGCAGCACTCCGGTCTATCTCGCGC TGCCGCTGGTCACCGGCAACCACATCGAAACCCGCCGGCCCGAGCAGAAGGACGTGCTGGCGCGCTATACCGCCCACGAACTGGACGTCGCCGACTCCAA TGCCGGCGACAGCAGCACGAGCCAGGTCAGCACCGGTCTGCCAGATTTCCGCCTGCTGCTGGGCGAGCAGCAGAGCGACCAGGCCTACGTGAAACTGCAG
Amino Acid Sequence
>type VI secretion protein
MPRRITLAMLASLLVLGGCSALSPYSKLTKLDLELHGSDRLNPDLNGRPSPIVLRLLELKHPVAFENGDFFALYQRPKEALAPDLVTSEELELRPGESRE LKLSVQDGSRYVGVLAAYRDLPEASWRYVIAVPPQERTRIALSLDERGIALFDPLAEEGK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site