Pseudomonas sp. HMP271, DP64_RS14200

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_12, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGCTGCTGTTCTCCGACATCTCGGTGGACCGCGGCACTGGTCAAGTCTCGCTGCGTGGCAAGTTCGACAATGCCGACGGCTTGCTGCTGCCGGGCATGTA CGTGCGCGTTACAGCCCCCCAGGGTACCGACGCCAACGCCATTCTCGTGCCGCAACGCGCGGTGCAGCGCACCACCGATGGCAGTGCCCACGTGCTGGTG ATCGGCGCCGACAGCCGCGTCGAGACGCGCCAGGTGCAGACCGGCGCCATGCATGGCTCGCGCTGGCAGATCAGCCAGGGCCTGTCCGGTGGCGAGCAGG TCATCGTCGGTGGCCTCACCGGCCTGCAGCCCGGCGCCAAGGTCGAGCCCCGTACCGCCCAGGAGTCACAGCAGGCATCGCGCCAGTAAGCCCATCGACG ATCTTGCGAACCAGACCAAGGCGGATGCAGGTGAGAGAACGCCCCACCGCGCCGCCGCCGCGCAGCAGATCGTAAGCGAAGCCTTCGCGAGGAATTTCAC
DNA Sequence for Gene
>DP64_RS14200
ATGTCACTGTTCTTCATCAAGCGTCCCAACTTCGCGTGGGTGGTGGCGCTGTTCATTACCCTGGCCGGTCTGCTGGCGATTCCCCTGCTGCCGGTCTCCC AGTACCCCAGCGTGGCGCCGCCGCAGATCACCGTCACCGCCACCTACCCCGGCGCCTCGGCGCAGGTGTTGGTCGATTCGGTCACCAGCGTGATCGAGGA GGAGCTCAACGGCGCCAAGGGCCTGCTCTACTTTGAGTCCACCAGCAACTCCAACGGCATGGCCGAGGTGGTGGTCACCTTCCAGCCCGGCACCAACCCG GAACTGGCCCAGGTCGACGTGCAGAACCGCCTGAAGAAGGCCGAGGCGCGCATGCCGCAGGCCGTGCTCACGCAGGGACTGGAAGTCGAGCAGACCAGCG CCGGCTTCCTGCTGATCTACGCGCTCAGCTACAAGGAAGGCGCACAGCGCAGCGACACCACCGCCCTTGGTGACTACGCGGCGCGCAACATCAACAACGA GCTGCGCCGAGTGTCCGGCGTCGGCAAGCTGCAGTTCTTCTCCTCCGAAGCCGCCATGCGCGTGTGGATCGATCCGCAGAAGCTGGTCGGCTACGGCCTG TCCATCGATGACGTGAGCAACGCCATCCGCGGGCAGAACGTGCAGGTGCCGGCCGGCAGCTTCGGCGCCTCTCCCGGCAGCAGCGAGCAGGAGCTGACCG CCACCCTCGCCGTGAAAGGCACCCTGGATGACCCGGACGAGTTCGGCCGCATCGTCCTGCGCGCCAATCCGGACGGTTCTGCCGTGAAGCTGGCCGACGT CGCGCGCCTGGAGGTGGGCAGCGAAAGCTACAACTTCACCGCACGTCTGGATGGCAAGCCCACCGTGGCCGGCGCCATCCAGCTCTCGCCCGGCGCCAAC GCGCTGCAGACCGCCGCGCTGGTGAAACAGCGGCTGGACGAGCTGTCAGCCAACTTCCCCGACGACGTCGAGTACTCGGTGCCCTACGACACTTCGCGCT TCGTCGGCGTGGCCATCGAGAAGGTCATCCACACGCTGATCGAAGCCATGGTGCTGGTATTCCTGGTGATGTTCCTGTTCCTGCAGAACGTGCGCTACAC GCTGATCCCGGCGATCGTGGTGCCGGTGTGCCTGCTAGGCACGCTGACGATGATGTACCTGCTGGGCTTCTCGGTGAACATGATGACCATGTTCGGCATG GTGCTGGCCATCGGCATCCTGGTGGACGACGCCATCGTGGTGGTGGAGAACGTCGAGCGGATCATGGCCGAGGAAGGCCTCTCCCCGCCCGCCGCCACGG TCAAGGCGATGAGCCAGGTATCCGGCGCGATCATCGGTATCACGCTGGTGCTCTCGGCGGTGTTCCTGCCGCTGGCGTTCATGGCCGGCTCCGTCGGGGT GATCTACCAGCAGTTCTCGCTGTCGCTGGCGGTGTCGATCCTGTTCTCGGGCTTTCTCGCCCTGACCTTCACCCCGGCCCTGTGCGCCACGCTGCTCAAG CCGATCCCCGAGGGACACCACGAAAAACGCGGCTTCTTCGGTGCCTTCAACCGGGGCTTCGCTCGCCTGACCGAGCGCTATACCCGGCTGAATGGTGCGC TGGCGCGGCGCGCCGGACGCTACATGCTGATCTATGCCGGCATCGTCGCGCTGCTCGGCTACAGCTACCTGCGCCTGCCGGAATCCTTCGTGCCGGTGGA GGACCAGGGCTACATGATCGTCGACATCCAGCTGCCGCCGGGCGCCACCCGCGCGCGCACCGATGTCACCGGCCAGCAGCTGGAGCAATTCCTGCAATCG CGCGAGGCGGTGGCGTCGTCCTTCCTGGTGATGGGCTTCAGTTTTTCCGGCATGGGCGAGAATGCCGCGCTGGCCTTTCCGACCTTGAAAGACTGGTCGG TGCGCGATCAATCGCAATCCGCCGAAGCGGAAACAGCCGCAGTGAATGAGCGCTTCGCCGGCATCAGCGATGGCGCGATCATGGCCGTGACGCCGCCACC AATCGACGGCCTGGGCAACTCTGGCGGCTTCTCGCTGCGCCTGCAGGATCGCGCCGGTCTCGGCCGCGAGGCGTTGCTGGCGGCCCGCGACCAGCTGCTC GGCCAGGCCAACGGCAACCCGAAGATTCTCTACGCCATGATGGAAGGCCTCGCCGAGGCGCCGCAGCTGCGCCTCAAGATCGACCGGGAGAAGGCGCGCA CGCTGGGTGTCAGCTTCGAGTCCATCAGCAGCGCGCTGTCCACCGCGTTCGGCTCCTCGGTGATCAACGACTTTGCCAACGCCGGCCGCCAGCAACGCGT GGTGGTGCAGGCCGAACAGGGCGACCGGATGACGCCCGAAGCCGTGCTCAAGCTCTACGTACCCAACAGTTCCGGCGAGCTGGTGCCGCTGTCCGCCTTC GTCAGCACCGGCTGGGAAGAAGGCCCGGTGCAGCTGGCGCGCTACAACGGCTACCCGTCGATCCGCATTTCCGGCGACGCCGCGCCCGGCGTCAGTACCG GCGAAGCGATGGCCGAGATGCAGCGCCTGGCCGCCGAGCTGCCAACCGGCATCGGCTACGAATGGACCGGCCTCTCCTACCAGGAGAAGGTGGCCAGCGG CCAGGCCAGCCAACTGTTCGCGCTGGCGATCCTGGTGGTGTTCCTGCTGCTGGTAGCGCTCTACGAGAGCTGGGCAATCCCGCTGGCGGTGATGCTCATC GTGCCGATCGGCGCCCTCGGCGCGGTGCTCGCGGTGACAGCCACCGGACTGCCCAACGACGTGTACTTCAAGGTCGGCCTGATCACCATCATCGGCCTGG CGGCGAAGAATGCGATCCTCATCGTCGAGTTCGCCAAGGAGCTCTGGGAACAGGGCCACAGCCTGCGCGACGCCGCCATCCAGGCCGCACGCCTGCGCTT TCGCCCGATCATCATGACTTCCATGGCGTTCATTCTCGGCGTGGTACCGCTGGTGATCGCCAGCGGCGCCGGCGCGGCCAGCCAGCGCGCCATCGGCACC GGAGTCATCGGCGGCATGCTCAGCGCCACCCTGCTGGGGGTGATCTTCGTGCCCGTCTGCTTCGTCTGGCTGCTGTCGCTGCTGCGTCGCCAGCCCAAAA CTGCGCATCAACCCTCGGAGACCGCGCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCGCCCTGCGCAAACCTGCCCTCATGCTGCTGGCCCTCACCCTGTCCGGCTGCTCGCTGGCGCCCAGCTACGAACGCCCCCTAGCGCCGGTGGCACAGAG CTGGAGCGCCGCCTCCCAGACGGGTACGGCGGCGGCCAGCCTGGAGTGGCAGCGCTTCATCGTCGACCCTGACTTGCGCCAGCTGGTGAGCATTGCCCTG GACAACAATCGCTCGCTGCGCCAGACCCTGCTGGACATCGAGCAGGCGCGCGCCCAGTACCGCATCCAGCGGGCCGACCGCGTACCCGGCCTGAATGGCT CCGCCAATGGCAATCGCCAGCGGTTGCCGGCGGACCTGTCCAACAGCGGCAGCTCGGGCGTCAGCAGCAGCTATCAGGTCGGCCTATCGCTGCCCGAGTA CGAGCTGGACCTGTTCGGCCGGGTGAAGAACCTGACCGACGCGGCGCTGGAGCAGTACCTCTCTACCGAGGAAGCCGGCCGCAGCGCGCGCATCGCGTTG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSLFFIKRPNFAWVVALFITLAGLLAIPLLPVSQYPSVAPPQITVTATYPGASAQVLVDSVTSVIEEELNGAKGLLYFESTSNSNGMAEVVVTFQPGTNP ELAQVDVQNRLKKAEARMPQAVLTQGLEVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNELRRVSGVGKLQFFSSEAAMRVWIDPQKLVGYGL SIDDVSNAIRGQNVQVPAGSFGASPGSSEQELTATLAVKGTLDDPDEFGRIVLRANPDGSAVKLADVARLEVGSESYNFTARLDGKPTVAGAIQLSPGAN ALQTAALVKQRLDELSANFPDDVEYSVPYDTSRFVGVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPAIVVPVCLLGTLTMMYLLGFSVNMMTMFGM VLAIGILVDDAIVVVENVERIMAEEGLSPPAATVKAMSQVSGAIIGITLVLSAVFLPLAFMAGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLK PIPEGHHEKRGFFGAFNRGFARLTERYTRLNGALARRAGRYMLIYAGIVALLGYSYLRLPESFVPVEDQGYMIVDIQLPPGATRARTDVTGQQLEQFLQS REAVASSFLVMGFSFSGMGENAALAFPTLKDWSVRDQSQSAEAETAAVNERFAGISDGAIMAVTPPPIDGLGNSGGFSLRLQDRAGLGREALLAARDQLL GQANGNPKILYAMMEGLAEAPQLRLKIDREKARTLGVSFESISSALSTAFGSSVINDFANAGRQQRVVVQAEQGDRMTPEAVLKLYVPNSSGELVPLSAF VSTGWEEGPVQLARYNGYPSIRISGDAAPGVSTGEAMAEMQRLAAELPTGIGYEWTGLSYQEKVASGQASQLFALAILVVFLLLVALYESWAIPLAVMLI VPIGALGAVLAVTATGLPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEQGHSLRDAAIQAARLRFRPIIMTSMAFILGVVPLVIASGAGAASQRAIGT GVIGGMLSATLLGVIFVPVCFVWLLSLLRRQPKTAHQPSETAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site