Pseudomonas sp. HMP271, DP64_RS12610

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_10, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGAGTTTCGTTTCTATGGCCCGGCGAATCTGCGCGACAAGCTGGAACCGCTTGAATCCAACTGCCGCAAGACAAATGAGCTGCAGGCCAACGGGGCAAAC CGTCCATGCCTATTGGCAATAACGACGGATGATCGCAAAAAATTCGTGCTCAACCCCCTGGCTTTCCTGAAGACCAGCTCCGCCGATAACAAGACCGGAG CGGATACCGACAAGGCCGCCAATACAGCTTTCGTAACCTGGATGCCTTACCGGGGAACCGTGCCCGGTGCCGACGATAGCGATGACAGCAACATCACCAG CAGTGATCGCGCCGCCTACTGGAATACCCATCTCATCGCCATGACCGAGGACGACTCATCGTTGAATCCAGAATATGGAGCTGCGATGGAAGGACGCGGC ACTTACTTCTATGTGGTTAACGGACAAGCCGCGGATCAACTGGCCGTACAGTCCACCACCGCAAACATATACCTCGGCCTGAACAATTGAGAGCAGAAAC
DNA Sequence for Gene
>DP64_RS12610
ATGAAAGGAATTCAGACCGCCCGGCCGGCCATCTTCTTCGCCAGCGCCATCATCGGAACCACATTAATCAGCGCGGCAACCAGCGCCCAGGCCGCCATAT CCCAGAGTCCACTCAGCCTGACGGTCGGCGTATCGCCCAATATCATTTTCACCCTCGACGAATCGGGCAGTATGTCTTGGGGCTACGTTCCAGACTCTAT CGAAAGCAATGTCATAAACAGCGGCACGATAACTCGCCTGTACGCAGCTTCCGAATACAACTCGATGTACTACAACCCGAACATTACTTACATCGCCCCC CCATCATTCGATGTAAACGGCAACGAGATAAAGCTGACCACTTCATTTAGCTCAGCCCCGATCAACGGCTTCCGCCCCAACGACGGCACCTTGGACCTAT CCATTGATTACCGTCCAACTGGTAAAGAGTACCGGATGCCGCTCGGAACCCACCAGCGGGCTAACAATCCGCCAAACGACTTTTCAGTCTTCCAATCTTT CAACACTAACGAAACCCGAACCGCAACCAGTGCAGCCGGTATCGAGTTCGAGATCACCCGTTCCGGCACATCAAAAAAATACACATATGACTGTGTCATC AAACAAGCCGGCCCCGTGCTGGATGCTACCGCTTTCAGCTGCACCAGAAACAGCAATACCTACACCGCCAAAACTCCGGCCTACTACTACACTTACGACG ACACCTTGCAATCGTGCGACGCTAGGAAGTCAAACACCAACTGCTACAAACTCGTATTCGTCAAGGACAACGAGAAAGAGAACTTCGCCACTTGGTATTC CTTCTACCGAACCAGAGCACTGGCCACCTTATCAGCAACCAGCCTGGCATTTTCCCAGCTTTCCCCGGCAATCCGACTAGGCTGGCAAAACCTAAAACTG TGCACCAACCTCAACGGCGGAGATACAACAAACTGCAAGGACAACAGCTTCCGCCAATACGACGCACAACATAAAGGCCAATTCTATAGCTGGCTCAAAG ATGTCTATTTCAACAGCGGAACACCTCTACCAGGTGCAATGAAGAGAGCCGGCGAATTTCTTAAAAGCGATGTGGCTTGGCACAAATACCCTAACTCTCG GGTCGAATCCAATAAGAATACAGCCGAAAACACCTATGCCTGCAGGCCGAGTTACCACATCCTGATGACTGACGGCATGTGGAACGAAACGACCACCAAT CCCAGTTCGTTCCAGCACGATGGTGACAGTATCGACTTGCCCGACACCAAGAGCTATTCGAAGCAACGACCCTACGTGGACGCTACTTCCAATACGCTGG CCGACCTGGCAATGCACTATTGGTCCACGGACCTCCATAGTCTCAAGAACAGGGTTAGTCCGTTTTTTGCCGATAAAACTGGTAGCGACACTGAAAACTA CTGGAATCCGAAGAACGACCCGGCCACTTGGCAGCACATGACAAACTTCATCATGGGATTGGGCCTCACCAGCTCCATGAACGTTTCGGGCTTGCCGTGG GAAGGTTCGACATTCGCCGGAGAAGGCTATGAAGCCTTGCTGAGCGGAACGCAGAACTGGCCGCCGGCGGCGTCCGGCTCGTCCAACAACGTATACGACC TCTGGCACGCCGCAATCAATTCGCGCGGAGAGTTCTTCAGCGTCGACAGTCCCGACGCAATGGTGCAAGCGTTCGAAGACATCCTGAACCGGATTGCTGA CCGAAAGTCCTCCGCGGCCAGGCCGGCGACCAGCTCCGGGTTGGTTATCGACGACATGGCCACCAGCGTTTCCTATCAAACTTCCTACGCTAGCGACGAG AACTGGTCGGGCGATCTCAAACGCTCCTCCAAGCAGCTTGTACTCAAAGATGGTAAGTACGTGCTCGAAATCAAAGAAGACTGGAGCGCACAGAAAGAGT TACCAGCGGCAGCCAGCCGCACGATAAAGATTGCGGATGAAGGCGGCGCCAACACGAGCAAGCTCAAGGACTTCAGCTCGGATAACGCAGGCGACCCCAC AACGGTGGGAACGCTGGCTTACTACCTGAACATCAACCCCGAGACAGCGGGTGAGTCGGCAGACAGCAGGTGGGAACAACGCATTGACTACTTGCGGGGC GACGATAGTCAAGAAGGGACTAACGAAGATGACTTCCGCACGCGCACCAGTGCACTTGGCGACCTGTACGGTTCCAGCCCCGTGGTAGTATCCGGCCCAC GCTATCTCGAGAGTTTCGCCAACCGTCTGGAAGGGCATCTTGATAAGGACGGCAAGGTAACCGGTGAAAATTCCTACTCGGCATTCATGGCAACCATCAA CGGCACGGCGGAAGGCTCGACCAAACGCAGCGGTCGCGTATATGTCGGCGGTAATGACGGCATGCTGCATGGATTCAACACGGATACCGGCATCGAAGAG TTTGCCTTCATCCCCACAGCTGTTTTCAATAAGCTCAATAAACTGACCGGCAAGAACTATAGTCACCAGTTCTATGTCGATGGCTCACCAGTGGTCGCCG ACGTTTACGATCAAGATAATAACAAGTGGCGCACCATTCTGGTGGGCACCCTACGCGCAGGCGGCAAAGCGCTATTTGCCCTGGATATCACCACCCCCGG TAGCGAACAGTTGCTGTGGGAGTTCGACGCGAGCGACGTAGCGGATGAAGAGGCGGTTAAACCCGGCTACAGCTTCTCCACACCGACCATTGCCCGTCTG CATAATGGCCGTTGGGCCGTGGTCACTGGTAACGGCTATGAAAACGGTGCCAGTGATGGCAAGGCGGCACTTTATATTATCGACGCCGTAACCGGACAAC TGACCAAGAGCCTGGAAGTATCGGGAGCCGAAGGCGTCGCTAATGGCCTGTCCAGCCCTGTGCTGGCCGACTATAACGCCGACGGCATAGCCGACTATGC CTATGCTGGTGATCTCCAAGGCAATCTCTGGCGCTTCGATCTGATCCCCACCCTCAACACCGATGCCGACGGGGACGGCGCTCTTGACGATACTGCCCCC TTGGCGACCGGTAAGCTCGGAACCGTTACCGCCGATAACTTCAAGGTTGCCTACGGCGGAAAACCCATGTTCCAGGCCAAGGCGGGTGGTAGCGCAACAT CTCCGGCCCAGTCCATCACCGCGGCGCCCAGTCTGGTTCGGCACCCGAGCGGCGTGGGCTATCTCGTGGTCTTTGGTACGGGCAAGTTCTTCGAGACTGA TGACAAGGAAGGGGTCAAGACCCATGCACAGAGCGTCTACGGCATCTGGGACACCAAGACCCGCGCCGAGCCAACCAGCGTCTTTACCATCAAGCGGCCG GAACCGACTGATACTACTGGCCAGTTGGTGAAACAGAAGATCGAGCAAGAGCTGACCGGGACTTACACGCAAGGGGGCACAAACCCGGCACGCACCATCA CGACCAATGCCGTGGACTGGGTCGACGCGAACGGCAATATCCAAAGGTATGGCTGGTATCTGGACCTCGCAGTCGACGAGACTCAGTTCGAGGGCGAGAT GCTGATCGAAAAGATGTCGACTCTTGGCCAGACGCTTTTCTTCCAGACCCTGGTCCCCAACGACGATCCGTGTGCGGACGGCGCGAGCAACTGGACCTAT GCGCTCAATCCCTTCACCGGAGGCCGGACCTCATTCCATGCCTTCGACCTTCGACATATTGATAGCAACAACGCAGTGAATGTTGTAAGCGGCATCAAAC AGGACGGCGAAGGTGGCGTTACCATTTCGCAGACTCCGGAAGGCTTCGAGGCATGCACCGGCCTGGTGTGCCAGAAGATCTATCCAGACCCATCCAGCAT TGGCCGCCAATCGTGGCGAGTAGTAGGAAACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TATGGCGCAGCACCACAGCAAGGGCTTCACGCTGATCGAGTTGATGATCGTAGTCGGCATTCTCGGCATTCTCGCTGCTATCGCCTACCCCAACTATATG GAGTACGTGCAGCGTAGCAATCGAAGCGAGGGACAGGCCTTGCTTCAGGATGCCGCCGCCGGACAGGAGCGCTTTTTTGCCCAGAACAACAGCTACGTAA CCACAGCTGCGGATATTGCCAAGCTGGGACTGCGCGGCACTAACGGCACCACCGTCGAGTCTGATAACGGCAAGTACACCCTGACTGTCGCTGGTGGCGG CGGCGGCTATACGCTCACCGCAACGCAGGCCTTCGGTGATGTCGCCTGCGGCAACCTCACGCTTAACGCGCTTGGCGTCAGAGGTCGCACCGGCAGCGGA AAGACCGTGGAGCAGTGTTGGAAGTAATCAGCAGATAGACGAAGAAGCCCGGCATCACTGCCGGGCTTCTTCGTTAATGACCGGAACAACCAGCCACATG
Amino Acid Sequence
>pilus assembly protein PilY
MKGIQTARPAIFFASAIIGTTLISAATSAQAAISQSPLSLTVGVSPNIIFTLDESGSMSWGYVPDSIESNVINSGTITRLYAASEYNSMYYNPNITYIAP PSFDVNGNEIKLTTSFSSAPINGFRPNDGTLDLSIDYRPTGKEYRMPLGTHQRANNPPNDFSVFQSFNTNETRTATSAAGIEFEITRSGTSKKYTYDCVI KQAGPVLDATAFSCTRNSNTYTAKTPAYYYTYDDTLQSCDARKSNTNCYKLVFVKDNEKENFATWYSFYRTRALATLSATSLAFSQLSPAIRLGWQNLKL CTNLNGGDTTNCKDNSFRQYDAQHKGQFYSWLKDVYFNSGTPLPGAMKRAGEFLKSDVAWHKYPNSRVESNKNTAENTYACRPSYHILMTDGMWNETTTN PSSFQHDGDSIDLPDTKSYSKQRPYVDATSNTLADLAMHYWSTDLHSLKNRVSPFFADKTGSDTENYWNPKNDPATWQHMTNFIMGLGLTSSMNVSGLPW EGSTFAGEGYEALLSGTQNWPPAASGSSNNVYDLWHAAINSRGEFFSVDSPDAMVQAFEDILNRIADRKSSAARPATSSGLVIDDMATSVSYQTSYASDE NWSGDLKRSSKQLVLKDGKYVLEIKEDWSAQKELPAAASRTIKIADEGGANTSKLKDFSSDNAGDPTTVGTLAYYLNINPETAGESADSRWEQRIDYLRG DDSQEGTNEDDFRTRTSALGDLYGSSPVVVSGPRYLESFANRLEGHLDKDGKVTGENSYSAFMATINGTAEGSTKRSGRVYVGGNDGMLHGFNTDTGIEE FAFIPTAVFNKLNKLTGKNYSHQFYVDGSPVVADVYDQDNNKWRTILVGTLRAGGKALFALDITTPGSEQLLWEFDASDVADEEAVKPGYSFSTPTIARL HNGRWAVVTGNGYENGASDGKAALYIIDAVTGQLTKSLEVSGAEGVANGLSSPVLADYNADGIADYAYAGDLQGNLWRFDLIPTLNTDADGDGALDDTAP LATGKLGTVTADNFKVAYGGKPMFQAKAGGSATSPAQSITAAPSLVRHPSGVGYLVVFGTGKFFETDDKEGVKTHAQSVYGIWDTKTRAEPTSVFTIKRP EPTDTTGQLVKQKIEQELTGTYTQGGTNPARTITTNAVDWVDANGNIQRYGWYLDLAVDETQFEGEMLIEKMSTLGQTLFFQTLVPNDDPCADGASNWTY ALNPFTGGRTSFHAFDLRHIDSNNAVNVVSGIKQDGEGGVTISQTPEGFEACTGLVCQKIYPDPSSIGRQSWRVVGN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site