Strain | Pseudomonas sp. FGI182, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CCGGCGAGGCCGGCCGTGGGTTCGCCGTGGTCGCCGACGAAGTGCAGCGCCTGGCCGAGCGCTCGTCGTCGGCTACCCGGCAGATCGAGGCGCTGGTGCG CACCATCCAGGCCGACACCAACGAGGCGGTGATCTCCATGGAGCAGACCACCGCCGAAGTGGTGCGCGGTGCCCGCCTGGCCCAGGATGCCGGGGTGGCA CTGGCCGAGATCGAAGGCGTATCGCAGAACCTCGCCGACCTTATCCACAGCATCTCCGATGCCGCCCAGCTGCAGACTTCGTCTGCCGGGCAGATCTCCC ACACCATGGCAGTTATCCAGCAGATTACCGCGCAGACGTCCGCCGGCTCCGGCGCCACCGCCGACAGCATCCGCCACCTGGCACGCATGGCCAGCGAGAT GCGCCGTTCGGTGTCCGGGTTCACCCTGCCGCCACCAGCAGAGCCCAAGTGAATAGCCCTACTGATGAGCTCTACTGAAAAGCCGCGCCGAGGAGTGCCC
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DNA Sequence for Gene |
>C163_RS23945
ATGGCTGTAGCTGCAGTAAGCCCCGAGCGCCACGACACAGTGGCGCTGGCCTGGACCAAGGCCGCCATCCTCGACTGCCTGGGCCAGGCGCGCCAGGCGC TGGAGCGCTTTGCCGGCGAGCCTGGCGACCTGTCGATGCTGGCATTCGTGGTCGACAACCTGCACCAGGTGCACGGCTGCCTGCGCATGCTCGAACTGCG CGGCGCCACGCGCCTGGCTGAAGAACTGGAGCTGTTCGCCAGGGCCCTGGCCGATGGCCAGGTCAGCCCCCGCGGTGATTGCCTGGGCGCGTTGTTCCGC GGCCTGGAGCAATTGCCGTCGTATCTGGAGCGCCTGCGCGGCGCCCGCCACGACCTGCCACTGGTGATGCTGCCGCTGCTCAACCAGCTGCGTGCCTGCC GTGGCGAGGAGCCGTTGGCCCAGGCCAGCCTGATCAGCGGCGCCACCCAACGCTTTGCCGGTGCCGACGACCTGGCCAACCTCGACCTGTCGCTGGGCAA CTGGCGCGAGCAGCTGCAGGCCGGGCCGGGCCGCGATGCCCTGCGCTCGGTGGTGACCGCGCTGTGCGACGACCTGATGCGCATCAAGGAGCGCCTGGAC CAGTTCGTGCGTGGCGACCGCCAGCACAGCGAGCAGCTCGATGCCCTGCTGGCACCGCTGCGCCACGTGGCCGACACCCTGGCGGTGCTTGGCTTCCAAC AGCCACGCCGGGTGATCATCGACCAGGTGCTGGCGTTGCAGGCCCTGGCCCAGGGCGAGCGGGCGGTGGACGACGCGGTGTTGATGGATGTAGCGGGGGC CCTGCTGTACGTGGAGGCCACGCTCAATGGCATGGTCGGCCCGCTGGAGGAAAACGGCCAGGGCGGCCTGCCGGGCTCGGACCTGGCCGAGATCCGCCAA CTGGTGTTGAACGAGTCGCTGAACGTGCTGCAGCAGGCCAAGGACCTGATCGGCGATTGCCTGGAGTCCGGCTGGCCGCGGCAACGCCTGCAACCCTTGC CAGGGCTGTTGCAGCAGATTCGCGGTGCGCTGGCGATGTTGATGCTGCCGGCCGTGGCCGAGCTGTTTGCCGGTTGCGCCAGCTATGTACAGCGCTGGCT GCAGCACCTGGACGTGGAGCCGCCAGCCGATGAGCTGACGCACCTGGCCGAGGCCCTGAGCGCCGCCGAATGCTACCTGCAATGGCGGGTGGCGGACCCA TTGGCGGATGGCCAGCCCTTCATCGACATGGCGCGCGCCAGCCTGGCGACGCTGGGTGTGCACTGCGCGCTGGTCGAGGCCACCGCGGGCCACGATGGCA GCGCTGATGGCATCGATGACGAGTTGCGTGAAGTGTTTCTCGACGAGGCTGGTGAGCTGCTGCCGGAAATCGAGCGCCACTGGCTGCGCTGGCGTGCCGA CAACCAGCAGCGCGAGGCACTGGGAGAAGTGCGCCGCGCCTTGCATACGCTCAAGGGCAGCGGCCGCATGGTACATGCCGAGGCGGTGGCCGAGCTGGCC TGGGGCGCCGAGCACCTGCTGAACCGGGTGCTCGAGGGCCGTAGCGTGCTCAGCCCGGAAGGCGTGGTGGCCCTGCAGCAGGCATTCGTCTACCTGCCCG ACCTGCTGGCCGACTTTGCCGCCGGCCAGCTGCCACAACTGACGGAAATCGAGCAGTTGGCCGGGCACCTACATGCCCTGGCCGAAAACGATGCCCCGGT GGCGGCCGACATCGACGGTCTCGACCCGCAATTGCTCGACATCTTCCGCAGCGAGGCGCAGGGCCACCTGGCCAGCCTGGATGCTTTCCTGCAGGGCGCC GACGGCCACGATACGCAGGTCAGCGATGGCCTGCAGCGCGCCCTGCATACGCTCAAGGGCAGTGCCGCCATGGCCGGGGTGATGCCGGTCGCCGAACTGG CCACCGCCTTCGACCGCCTGGCTCGTGAATACAAGGGCCACCAACTGCCCCTGCAAATGGCCGAGATCGAATGGCTGGAAGCTGCTCGCTCGCTGTTCCA TCTGGGCCTGGCGCAACTCGACAGCACGCCGCTGGCGGCCATCCCCGGTGCCGCGGAGCTGATCGAGCAGGTCGGCCAGGCGGTGGACGCGCACCTGGTC AGCTTGCATGACGACCCGCAGCATGCGCGGCGCAGCAAGCGCGACCCGCAGTTGATTGCCAGTTTCCTGGCCCAGGCCATGGATATCCTGCTGGATGCCG AGTCGTTGCTGTCGCGCTGGCAGGAGCAGCCCGGCCAGCGCGATGCGCTGGACGCCCTGCTTGACGAACTGACCACCCTGGGCCACGCCGCGCACTTGGC CGACCTGTGGCAGATGGATGATGTGTGCGAGGCCTTGCTCGACCTGTACGGCGCCGTGGAGGAGGGCAGCCTGCCCGCCGATGCGCGCTTCTTCGCCCAC GTGCAGCGGGCCCATGAAGCCCTGCTGGACATGCTCGACGAAGTGGCGGCCGGGCAGGACATCCCGCCAAGGCCGGAGCTGGTCGACAGCCTGCGCAACC TGCTGGGCCAGGCCCTGGCACCGGAGGCCACTGGCCTGGTAGGCATCGACACGGTCACGCCGCTGCACCCGGACATGGACCTGGCCGATACCCTTGGCCT GGGGCCGGCGCAGCACCCTTTGCTGCCGGCTGTGGCCGAGCCGCTGGTCGAAGAGCCGGAAAGCCCAGGCGAAGAGCTGCTGGAAGTCTTCCTCGAAGAA AGCTCGGACATCGTCGAGAGTGCCGCCGCAGCCCTGGCGCGCTGGCAGGCCGACCCGCGCAACAGCGTCGAGGTGGACAACCTGATGCGCGACCTGCACA CCCTGAAGGGCGTGGCGCGCATGGTCGAAATCGCGCCAATCGGCGACCTGGCCCACGAGCTGGAGTTCCTCTACGAACTGCTGGCCGCTGGCCGTATGCC GCCGAGCGCGCCACTGTTCGCCTTGCTGCAGAACTGCCATGACCGCCTGGCGCACATGCTCGATGCCGTGCGCCTGGGGCAGCCGTTGCATGCCGCCACT GCGCTGATCGACTACATCCGCAACTTCAGCTTCTCGGCCCTGGCCGACAGCGCCGCTGGCCAGGGGCCTGTCGAGGCCGCGACCAGTGAGGCGCCGGCGG CGGCGCCGGAGCGGGCGCCGGGCGACATGGTCAAGGTCGATGCCGAGTTGCTCGACGAGCTGGGCAACCTGGCCGGTGAGCACTCGATCATCCGTGGGCG CATCGAGCAGCAGGTAAACGATGCGCAGTTCACCCTCAACGAGATGGAAACCACCCTCGAACGCATGCGCGACCAGTTGCTGCGCCTGGATATCGAGACC CAAGGGCGGATGTCCAGCCGGCAGCAGTTCGAAGGCGATGCCTATGACGACTTCGACCCGCTGGAAATGGACCGCCACTCGCAACTGCAGCAGCTGTCGC GGGCCCTGTTCGAGTCTGCCTCGGACTTGCTCGACCTCAAGGAAACCCTGGCACAGCGCGCCCAGGAGGCCTACAGCCTGCTGCAGCAGCAGGCGCGGGT GAACAGCCAGTTGCAGGAAGGCCTGACCGCGACCCTGATGGTGCCCTTCGAGCGCCTGGTGCCACGCTTGCAGCGCGTGGTACGGCAGGTGGCCAGCGAA TTGGGCAAGCAGGTGGAGCTGGTGGTGGGCAATGCCGAGGGCGAACTGGACCGCAGCGTGCTTGAACGTATGGTGGCGCCGCTGGAGCATATGCTGCGCA ACGCCGTCGACCATGGCCTGGAAAGCCGCGAAATGCGCCTGGCCGCCGGCAAGCCGGAGCAGGGCACCATTCACCTGAATCTGCTGCACGAAGGCGCGGA CATCGTCATCGAAATGACCGACGACGGTGCCGGCGTGCCACTGGAAGCGGTGCGCCGCAAGGCCATCAAGCGCGGCCTGCTGGACCCGCAGGCGCAGTTG AGCGATCACGAGATCCTCCAGTTCATCCTGCGCCCGGGCTTTTCCACTGCCGAGAAGATCACCCAGATTTCCGGGCGTGGCCTGGGCATGGACGTGGTAC ACGAAGAGGTCAAGCAACTGGGTGGCTCGATGAGTATCGAGTCGGCCCAGGGCAAGGGCGCGCGCTTCCTGATCCGCCTGCCGTTCACCGTGTCGGTCAA CCGTGCGCTGATGGTGCACCTGGGCGAAGAGCAGTACGCCATTCCGCTGAACACCATCGAGGGCATCGTTCGCGTGCCGCCGGCCGAACTGGCGGCGTGC TACCAGCTGGACGCCCCGCGTTATGTGTACGCCGGCCACGAATACGAGCTGCGCTACCTAGGTGAGCTGCTGCAGGGCATGCCACGCCCGGCATTGCTCG GGCAGAGCGTGCCGCTGCCGGTGCTGCTGGTGCATTCCCAGGAGCAGTCGTTCGCCATCCAGGCCGACAGCCTGTCGCCCAGCCGCGAGATCGTGGTGAA GAGCCTGGGGCCGCAGTTTGCCGCGGTTGCCGGGTTGTCGGGGGCAACGCTGTTGGGCGATGGGCGGGTGGTACTGATTCTCGACCTGCTGGGCCAGTTG CGTGGCCAGCAGCGGCGCCTGGCGCGCCTACCGGGTGGCGGTGCGGCCCGGCGCCAGGTGTTCGGCCCGGCGCCACGGCGGGCGTTGCTGGTAATGGTGG TGGACGATTCGGTGACCGTGCGCAAGGTCACCAGCCGCCTGCTGGAGCGCCACGGCATGAGTGTGCTGACGGCCAAGGACGGGGTCGATGCGATGGCCCT GCTGGAAGAACACCGCCCCGATGTGTTGCTGCTGGACATCGAGATGCCGCGCATGGACGGCTTCGAGGTGGCCACACGTATCCGCCGTGACGAGCGGCTG AAAGACTTGCCGATCATCATGATCACCTCGCGCACCGGGCAGAAGCACCGCGACCGTGCCATGGCCATCGGCGTCAACGAATACCTGGGCAAGCCGTACC AGGAGTCGGTCCTGTTGCAGAGCATTGCCCATTGGAGCCAGCCCCATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACTGATCGCCGGCCAGCGCAGCAGCCTGACCGGGCTTTTGCTGCCGTTGGGTGACCGTACCCTGGTGTTGCCCAACGTGGCGGTTGCCGAACTGAGTGGC CAGCGCAATCTGGTGTGCCAACGCGGCGAGCCGGCCTGGCACCTGGGCTGGATCGACTGGCGCCAGCAGCGCCTGCCGCTGATCGGCTTCGAAGCCGCGT GCGGTGGTGAGACACCCTGCGGCGAGCGGGCACGCGTGGTGGTGCTCAATGCCCTGGGTGATACCGGCCTGCGTTACCTGGCGTTGTTGCTGCAGGACAT ACCGCGCTCGTGCAAGCTCGACAGCCAGCTGAACTACGTGGACGTGGCGCTGGGTCGCCTGGAGCTGGCGGCGGTGCAGGTGGGTGAGCAGGTGGCACGG GTACCGGACCTGGCTGCGCTGGAACGGCTGGTGCGTGACGCGGAACTGCAACCTGAGCTTGGGTAGGATGCAAGGCACAGGGCCTCTTCGCGGGTAAACC
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Amino Acid Sequence |
>chemotaxis protein CheA
MAVAAVSPERHDTVALAWTKAAILDCLGQARQALERFAGEPGDLSMLAFVVDNLHQVHGCLRMLELRGATRLAEELELFARALADGQVSPRGDCLGALFR GLEQLPSYLERLRGARHDLPLVMLPLLNQLRACRGEEPLAQASLISGATQRFAGADDLANLDLSLGNWREQLQAGPGRDALRSVVTALCDDLMRIKERLD QFVRGDRQHSEQLDALLAPLRHVADTLAVLGFQQPRRVIIDQVLALQALAQGERAVDDAVLMDVAGALLYVEATLNGMVGPLEENGQGGLPGSDLAEIRQ LVLNESLNVLQQAKDLIGDCLESGWPRQRLQPLPGLLQQIRGALAMLMLPAVAELFAGCASYVQRWLQHLDVEPPADELTHLAEALSAAECYLQWRVADP LADGQPFIDMARASLATLGVHCALVEATAGHDGSADGIDDELREVFLDEAGELLPEIERHWLRWRADNQQREALGEVRRALHTLKGSGRMVHAEAVAELA WGAEHLLNRVLEGRSVLSPEGVVALQQAFVYLPDLLADFAAGQLPQLTEIEQLAGHLHALAENDAPVAADIDGLDPQLLDIFRSEAQGHLASLDAFLQGA DGHDTQVSDGLQRALHTLKGSAAMAGVMPVAELATAFDRLAREYKGHQLPLQMAEIEWLEAARSLFHLGLAQLDSTPLAAIPGAAELIEQVGQAVDAHLV SLHDDPQHARRSKRDPQLIASFLAQAMDILLDAESLLSRWQEQPGQRDALDALLDELTTLGHAAHLADLWQMDDVCEALLDLYGAVEEGSLPADARFFAH VQRAHEALLDMLDEVAAGQDIPPRPELVDSLRNLLGQALAPEATGLVGIDTVTPLHPDMDLADTLGLGPAQHPLLPAVAEPLVEEPESPGEELLEVFLEE SSDIVESAAAALARWQADPRNSVEVDNLMRDLHTLKGVARMVEIAPIGDLAHELEFLYELLAAGRMPPSAPLFALLQNCHDRLAHMLDAVRLGQPLHAAT ALIDYIRNFSFSALADSAAGQGPVEAATSEAPAAAPERAPGDMVKVDAELLDELGNLAGEHSIIRGRIEQQVNDAQFTLNEMETTLERMRDQLLRLDIET QGRMSSRQQFEGDAYDDFDPLEMDRHSQLQQLSRALFESASDLLDLKETLAQRAQEAYSLLQQQARVNSQLQEGLTATLMVPFERLVPRLQRVVRQVASE LGKQVELVVGNAEGELDRSVLERMVAPLEHMLRNAVDHGLESREMRLAAGKPEQGTIHLNLLHEGADIVIEMTDDGAGVPLEAVRRKAIKRGLLDPQAQL SDHEILQFILRPGFSTAEKITQISGRGLGMDVVHEEVKQLGGSMSIESAQGKGARFLIRLPFTVSVNRALMVHLGEEQYAIPLNTIEGIVRVPPAELAAC YQLDAPRYVYAGHEYELRYLGELLQGMPRPALLGQSVPLPVLLVHSQEQSFAIQADSLSPSREIVVKSLGPQFAAVAGLSGATLLGDGRVVLILDLLGQL RGQQRRLARLPGGGAARRQVFGPAPRRALLVMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLEEHRPDVLLLDIEMPRMDGFEVATRIRRDERL KDLPIIMITSRTGQKHRDRAMAIGVNEYLGKPYQESVLLQSIAHWSQPHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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