Pseudomonas sp. FGI182, C163_RS22380
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FGI182, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCGCGGCGTTCAGTTCGCCATTGGCCTGCAGGGTGTTGAGCATCTGCCCCTGGGGGAACTGGCGCATCTTCAGCACGTACTCGATGGCTTCGCCTTCA CCACCGATCTGCGGCGCGTCGACGCTACCGGTGATCGGCAACACTTCCAGGTACAGGCCGTCGGTCAGGCGCTGGTTCAGGCGCAATTCTTCGTTACAAA AATGCTGGCGCTGGTCCAGGCCGGTGAAGTCGAGGAAGCCGAAGTTCATCGGCTTCTTGATCTTGTAGGCATACTCGCCAGTGAGCAGGACCCAGGAGAT ATGCGTCTCGATGAGCTGGAACCCATCCACGGGGTGAGGGTACAGGGCGGGGTTCTGCAACGCAGTGATAAGGGCTTGGCTCACGGGAAATCCTTCCGGG GGCAGGGAATTCGAATGCGCCATTATGGTCAATGGTGCCGTCCCTGCCTACCGCCGGGGGCGTCTGCCCAGCCTTTATAAAGTGCGTATAATCCGCCGCC
|
|
| DNA Sequence for Gene |
>C163_RS22380
ATGACCCGAACCCGAAATCCCCGTACCCCTCAGAAACGCCCGACCGGCCGCTCCCGCGCCTGGCTGGGCTGGGCTTTGAAGCTCAGCCTGGTCGGCCTGG TGATCATCGCCGGCTTCGCGGTTTACCTTGATGCTGTCGTCCAGGAAAAGTTTTCCGGCAAGCGCTGGACCATCCCGGCCAAGGTGTATGCCCGGCCGCT GGAGCTGTTTTCCGGCCAGAAGCTGAGCAAGAACGACTTCCTCACCGAGCTGGACGCGCTCGGCTACCGGCGTGAAAGCGCGGCCAACGGCCCGGGCGCG GCGGCAGTCAACGGCAACACCGTCGAGCTCAATACCCGTGGCTTCCAGTTCTACGAGGGCATGGAGCCGGCGCAGTTCGTGCGTGTGCGCTTCTCCGGCG ATTACGTGGCGGGCCTTTCCGGCGCCAACGGCAAGACGCTCGACGTAGTGCGCCTGGAGCCGCTGATGATCGGCGGCATCTACCCGAAAAACCTCGAAGA CCGCATCCTGATCAAGATCGACCAGGTACCGCCGTACCTGCTCGAAACCCTGGTGGCGACGGAAGACCGCGATTTCTACAGCCACTTCGGGGTGTCGCCC AAGTCCATCGCCCGGGCCATGTGGGTCAACACCTCGGCAGGTTCCATGCGCCAGGGTGGCAGTACCCTGACCCAGCAGCTGGTGAAGAATTTCTACCTCA CCAGCGAGCGCAGCCTCAGCCGCAAGCTGACCGAGGCGATGATGGCCGTACTGCTGGAGCTGCACTACGACAAGCGCGAGATCCTCGAGGCCTACCTCAA CGAGGTGTTCGTCGGCCAGGATGGCCAGCGTGCGGTGCACGGCTTCGGCCTCGCCAGCCAGTTCTTCTTCAGCCAACCGCTGTCGGAGCTGAAACTGCAC CAGATCGCCTTGCTGGTGGGCATGGTCAAGGGGCCGTCCTACTACAACCCGCGTCGCTATCCGGACCGCGCCCTGGCCCGCCGCAACCTGGTACTCGACC TGGTGGCCGAGCAGGGCGTGGCCAGCCAGGCAGAAGTCGATGCAGCGAAGAAGATGCCGCTGGGCGTGACCAAGCGCGGCAGCCTGGCCGACAGCTCGTT CCCGGCATTCCTCGACCTGGTCAAGCGCCAGCTGCGCCAGGACTACCGCGATGAAGACTTGACCGAAGAAGGCCTGCGCATCTTCACCAGCTTCGACCCG ATCCTGCAGATGAAGGCCGAAACCTCGATGAGCGAGACCTTCAAGCGCCTGGCGGGCCGCAAGGGGGCGGACGAGGTGGAGTCGGCGATGGTCGTGACCA ACCCGGAAACCGGTGAAGTGCAGGCGCTGATCGGCAGCCGCCAGGCCGGTTTCGCCGGCTTCAACCGCGCCATCGATGCCGTGCGGCCGATCGGCTCGCT GGTCAAGCCGGCGGTCTACCTGACCGCGCTGGAGCAGCCGACCAGGTACACCCTGACCAGCCTGGTGCAGGACGAGCCGTTCTCGGTCAAAGGTGCCGAC GGCCAGGTCTGGCGCCCGCAAAACTACGACCGCCGCCCGCATGGCACCATCTACCTGTACCAGGGGCTGGCCAACTCCTACAACCTGTCGACTGCCAAGA TCGGCCTGGATGTGGGCGTGCCCAACGTGATCAAGACCATTGGCAGGCTGGGTGTGAATGTCGACTGGCCAGCCTTCCCGGCCATGCTGCTGGGTGCCGG CGGCATGTCGCCGATGCAGGTCGCGACCATGTACCAGACCATCGCCAACGGCGGCTTCAACACCCCGATGCGCGGTATCCGCAGCGTGCTCACCGCCGAG GGCGAGCCGCTCAAGCGCTACCCGTTCCAGATCCAGCAAACCTTCGACCCGGGGGCCATCTACCTGGTGCAGAACGCCATGCAGCGGGTGATGCGCGAAG GCACCGGCCGCTCGGTGTACAACACTTTGCCGCGCAATCTCACCCTGGCGGGCAAGACCGGTACCAGTAACGATTCGCGCGACAGCTGGTTCTCCGGTTT CAGCCAGGACCTGCTGGCCGTGGTATGGATGGGCCGTGACGATAACGGCAAAACGCCATTTACCGGTGCTACCGGTGCCCTGCAGGTGTGGACCAGCTTC ATGAAGAAGGCCGACCCGCTGCCGCTGGACATGCCGCAACCGGACAACGTGGTGCAGGCCTGGATCGACCCGTACAGTGGCCATGGGTCTGATGGCAGCT GTCCGGGAGCGGTGCAGATGCCGTATATTCGCGGCAGTGAACCGCCCGCCGGCGCGACCTGTGGCGGCGAGCAGGATCCAGTTGAATCGGTCATGGACTG GGTCAAGGGCTGGATGAATTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCACAGGCTGCATTGATGAGGTGTGACGTGAACAAGTGGCTGTTTCCTGCCGTGACGGCGCTGGCTGTGCTCCAGGGGTGCGCCAGCGTCCCGCGCGGCA ATATTCCGGTGGTCGACTCGAGCACCCGCGTGTCCAACAGCGAACGCGTGACGGCCAACCGCTCTGCGGGTGGCTATAACGCGGGCACCGCGCAGGCGCA AACGCTGCCTGAAGACTCCGGCGTCACCGTGATGATCCCGCAGGGCGCTGGCGCTTCGGGCATCCAGACGTTCCCGGCGGCCAATGGCGCGGCGCCGATC AGCACCTCGCCGATTACCCCGGGGCCGATCACCCCAGGACCGATTACCACAGGGCCGGTCACTTCTGCACCGATGACCACCAACCCCAACCCGATCGCCG ACGAACCCTTCGACATCGCGGCGATGAACAGTGCCCCGCAAACCACCAGCGCGCCAACCGGTATCCCGCGTAGCAGTGCCGCTGCAGGTGGCCTGTCGGC
|
|
| Amino Acid Sequence |
>penicillin-binding protein
MTRTRNPRTPQKRPTGRSRAWLGWALKLSLVGLVIIAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFSGQKLSKNDFLTELDALGYRRESAANGPGA AAVNGNTVELNTRGFQFYEGMEPAQFVRVRFSGDYVAGLSGANGKTLDVVRLEPLMIGGIYPKNLEDRILIKIDQVPPYLLETLVATEDRDFYSHFGVSP KSIARAMWVNTSAGSMRQGGSTLTQQLVKNFYLTSERSLSRKLTEAMMAVLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLASQFFFSQPLSELKLH QIALLVGMVKGPSYYNPRRYPDRALARRNLVLDLVAEQGVASQAEVDAAKKMPLGVTKRGSLADSSFPAFLDLVKRQLRQDYRDEDLTEEGLRIFTSFDP ILQMKAETSMSETFKRLAGRKGADEVESAMVVTNPETGEVQALIGSRQAGFAGFNRAIDAVRPIGSLVKPAVYLTALEQPTRYTLTSLVQDEPFSVKGAD GQVWRPQNYDRRPHGTIYLYQGLANSYNLSTAKIGLDVGVPNVIKTIGRLGVNVDWPAFPAMLLGAGGMSPMQVATMYQTIANGGFNTPMRGIRSVLTAE GEPLKRYPFQIQQTFDPGAIYLVQNAMQRVMREGTGRSVYNTLPRNLTLAGKTGTSNDSRDSWFSGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSF MKKADPLPLDMPQPDNVVQAWIDPYSGHGSDGSCPGAVQMPYIRGSEPPAGATCGGEQDPVESVMDWVKGWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|