Pseudomonas sp. FGI182, C163_RS20040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. FGI182, complete genome. [Details]
DNA Sequence Upstream of Gene
ATCGCGCGCAACCGTGCGCCGCGGGTGCAGATCGAATATGACGTCGAGCTCTACGGCGCCGAAAAGAAAGTCCAGTTGCCGTTCGTCATGGGCGTGCTGT CGGACCTTGCCGGCAAGCCGGCCGAGCCGCTGCCAGCGGTGGCCGAGCGCAAGTTCCTGGAAATCGACGTCGACAACTTCGACTCGCGCCTGAAGGCGAT GAAGCCACGCGTGGCCTTCAACGTGCCCAACGAACTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAGAGCATGGACGACTTCAGCCCGGCC GCCGTGGCGCGCAAGGTCGACGCCCTCAACCAGCTGCTCGAGGCCCGCACCCAATTGGCCAACCTGCTGACCTACATGGACGGCAAGACCGGTGCCGAGG ACATCATCCTCAAGGCCATCAAGGACCCGGCCCTGCTGCAAGCCCTGGCCAGCGCACCGAAACCCGTCGACAACGAGCCCAAGGCCTGAGGAGACAGCCC
DNA Sequence for Gene
>C163_RS20040
ATGAACGATCCATTGCGCGACGCCCAGGCCCAGCCGGGAGCTGCCACCCAGGACCCGAGCGAGTTCGCCGCCCTGCTGCTGCAGGAGTTCAAGCCCAAGA CCGAACGTGCCAAGGAAGCGGTCGAAAGCGCCGTGCGTACCTTGGCCGAGCAGGCCCTGGCGCAGACCAGCCTGGTGTCCAACGATGCCATTGGCTCGAT CGAGCAGATCATTGCCGCCATCGACGCCAAGCTGACCGCACAGGTCAACCAGATCATCCATCACGACGACTTCCAGCAGCTGGAAAGCGCCTGGCGTGGC CTGCATTACCTGGTCAACAACACCGAGAGCGACGAGCAGCTGAAGATCCGCGTGCTCAACGTCTCGAAGACCGAGCTGCACAAGACCTTGAAGAAATTCA AGGGCACTGCCTGGGACCAGAGCCCGGTGTTCAAGAAGCTGTACGAGGAAGAGTACGGCCAGTTCGGCGGCGAACCTTATGGCTGCCTGGTCGGCGACTA CTACTTCGACCAGTCGCCACCCGACGTCGAGTTGCTGGGCGAGATGTCGAAGGTCTGCGCCTCGATGCACGCGCCGTTCATTGCCGCCGCCTCGCCGACC GTGATGGGCATGGGCTCCTGGCAGGAGCTGAGCAACCCGCGCGACCTGACCAAGATCTTCACTACCCCGGAATACGCTGGCTGGCGCTCGCTGCGTGAGT CCGAAGACTCGCGCTACATCGGCCTGACCATGCCACGCTTCCTGGCGCGTCTGCCTTATGGCGCCAAGACCGACCCGGTCGAGGCATTTGCCTTCGAAGA AGACACCGACGGCGCCGACAGCAGCAAGTACACCTGGGCCAACGCCGCCTATGCCATGGCCGTGAACATCAACCGCTCGTTCAAGTACTACGGCTGGTGC TCGCGCATTCGTGGCGTGGAGTCGGGTGGCGAAGTGCAGGGCCTGCCGGCGCACACCTTCCCCACCGACGACGGTGGCGTGGACATGAAGTGCCCGACCG AAATCGCCATTTCCGACCGCCGCGAAGCGGAGCTGGCCAAGAACGGGTTCATGCCGCTGTTGCACAAGAAGAACACCGACTTCGCTGCCTTCATTGGTGC CCAGTCGCTGCAGAAGCCGGCCGAGTACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCCTGCCGTACCTGTTCGCCACCTGCCGCTTC GCTCACTACCTCAAGTGCATCGTTCGCGACAAGATCGGCTCGTTCAAGGAGAAGGACGAGATGCAGCGCTGGCTGCAGGACTGGATCCTCAACTACGTCG ACGGCGACCCGGCGCACTCCACCGAGACCACCAAGGCCCAGCACCCGCTGGCAGCCGCCGAGGTTGTGGTCGAGGACGTCGAAGGCAACCCGGGTTACTA CAACTCGCGCTTCTACCTGCGCCCGCACTACCAGCTCGAAGGGCTGACCGTGTCGCTGCGCCTGGTATCAAAGCTGCCTTCGGCCAAAGGGGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CAGACTTCGGGGCCGCTTAGCGGCCCTTTCGCGACGCAAGGCCGCTCCTGCACAGAGGGCCGACGTCGTGTGTTGAGTGAGAGACCGACGCAGCTTCTGT AGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCAACTGCACCAAACCGCCAACCTGACGCGTAATACCGAGGACACCATGGCTGTAGATATT TTCATCAAGATCGGCGACATCAAGGGCGAGTCCCACGACAAGGCCCACAAGGACGAAATCGACGTGCTCAACTGGAGCTGGGGCATGTCCCAGTCCGGCA ACATGCACATGGGCAGCGGCGGCGGCTCGGGCAAGGTCAACATCCAGGACCTGTCGATCACCAAGTACATCGACAAGGCCAGCCCCAACCTGATGGCCCA CTGCTCCAGCGGCAAGCACATCGACAAGGTCAAGCTGACCGTGCGCAAGGCCGGGGGCGAGAGCCAGGTCGAGTACCTGATCATCAACCTTGAAGAAGTC
Amino Acid Sequence
>type VI secretion protein EvpB
MNDPLRDAQAQPGAATQDPSEFAALLLQEFKPKTERAKEAVESAVRTLAEQALAQTSLVSNDAIGSIEQIIAAIDAKLTAQVNQIIHHDDFQQLESAWRG LHYLVNNTESDEQLKIRVLNVSKTELHKTLKKFKGTAWDQSPVFKKLYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGEMSKVCASMHAPFIAAASPT VMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEAFAFEEDTDGADSSKYTWANAAYAMAVNINRSFKYYGWC SRIRGVESGGEVQGLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF AHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVVVEDVEGNPGYYNSRFYLRPHYQLEGLTVSLRLVSKLPSAKGA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site