Pseudomonas sp. FGI182, C163_RS20025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FGI182, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCCTGGGCGTCACGCTCCAGTTGCAGAAACTCGGCGTCATATTCGAGGTCATCGCCGCAGGGAAAGTCAGCGGAAACAGCGGCGAGCAGCGGCGATGCGT TCACCAGAATTCGATCTCCATATCGGCCCTTGGTGAGGGCGTGTTGTTGTGCGAAGTTGCAAGTGTGAACTGGCGCACAAACTTTCCAAAGAGTGCCGGG GTGATATCATGGTGATATTATTTTGGCACTTCGAAGTTGCGCATTTATGGTTTATTTATTCGCGAGTGTCAAGGTAAGCTACGCGCCCCCGAGTGCCAGC TGTGAATCCGTTGGCAGTTACCGAGCACCACTCGTCCGATTCCATTCGGTTAGCCTCGGCATTAGCGTTGAATAGCCGTCGTATGTTCGGTTGTGTGCAC GAAGCCCCCGTAAATCAAGGGGTGCAGCTGTATTTGAGTGGTTGTGGGGAAACAACTCAAATGGATGGATTGATGTTTTAAATGGATGCATGGAGGCGTG
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| DNA Sequence for Gene |
>C163_RS20025
ATGGCACTTTGCCTAACTATCACTAGTTACCACAAGATTACTCCCGGGCAATGCCCGGAGATGCGGCTGGAAACCGGTGCCATCACGCTTGGCCGTGCGG CGGATAATGACTGGGTACTTCCTGACCCCGAGCGGTTGGTATCGGCCCGGCATTGTGTGATCCAGTTCAAGGACGGGCGATATTTTTTGACCGATGACAG TACGAACGGTGTGGAATTAGTTCGTGCCGGTATTCGCTTGCGTCGCGGTAACAGTGAGCAGTTGCTGGATGGCGAAGTTATCCGTATTGGGGAATACGAG ATACAGGCGCGCATCGACGTGAACCTGCCTGGCGCCCTGGAGGGCGAACCCCAGGTACACAGTTTCGAGGCGCTGATGGCCAACCAGGTGGCGGCCCCGG CCGTTCCCGCCCCGCCGATTTCCGGTGCGCCGGCTGCGTTCCTGCAAGGTGCGTCGAACCACGACACGCTGCCTGACCTGTTCGACTTCCTCGGCCCCTC GAGCGTGCCGCCGGTCAGCCAGCCCGACCATGTGCCGGCTCAGCAGCACGACTTCCGCCCGCCAACCCCGGTGGTGGCACCTGCCCCGGCCGCCGAACCG GCTGCGCCGGGGATGATCCCGGAAGACTGGAACCTGTTCGGCTCGGCACCGGCTCCGACCCCGACCCCGACCCCGACCCCGACTGCGCCGCCTGCGCCAG CCGTTCCTGCAGTGCCTGCACAGCCTGCTGCAAGCGAACCAGTCGCCGCACCTGCGCCAGCCGCAAGCAGCGATGCGTTGCTGCAGGCGTTCCTGCGCGG CGCCGGTATCGAGCACCTGCGCATCGACGCCGCCGACGCCGCCGCGCAAATGGAGGCCATCGGCCAGAGCTACCGCTTGATGGTGGAGGGCCTGATCGAC GTGTTGCGTGCACGCAGCAGCCTGAAGGGCGAGTTCCGCATGCAGCAGACCACCATCGCCCCGGTGCAGAACAACCCGCTGAAGTTCGCCCCCAATGCCG ACGAGGCGTTGCTGCTGTTGCTGCGTCACGGTAACCAGGCGTTCATGGCGCCGGACCAGGCCGTGCGCGAAAGCTTCGATGATGTGCGCGCCCACCAGCT GGCGGTGATGGCGGGCGTGCAGGCCGCAATCAAGCACCTGCTCGCGTGTTTCCAGCCGGCGCGCCTGGAGCAGCGCCTGGCACCTGCGGCGGGGCTGGCC AAGTTGTTCGGTGGCTCGCGCCAGGCCCACTGCTGGCAGCAGTTCACCGAGCTTTACGGGCAGATCTCCCGTGAAGCCGAAGACGATTTCCAGGAACTGT TCGGCCGCGAATTCAGCCGCGCCTACGAGGCCCACAGCAGCCGTTTGCAACGTAGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCCCCCAGGAAGACCACGGTACGTCAAGAGGACAAGGATGAAAGCAATACGACTGGTCGCAGCCCTGAGCCTGGTGCTGCTGGCTGCCTGCAGCAAGG ACACGCCGGTTGCCCCCGCTGCCGACAGTGCACCGGACAGCGCAGCCGTGACCCTGTATTTCAGTGCCGCCGAGGGGCTGAACCCGGGCCCTGGCGGCAC GCCTGCGCCGGTACGGGTGCGCCTGTACGAGCTGAAGAACAGCGCCGCATTTGCCCGCGCCGACTACTTCGCCCTGGCCGAGCGCGCCCAGGCCACCCTC GGCGCCGACCTGATCGACCAGGACGAAGTGCTGTTGCAGCCCGGCGGCCAGTTGCGCCTGGAACGTCCGCTCGACCCTGCCACTCGCCACATCGGCCTGG TGGTCGGTTACCGCGAGATCGACCAGGCCCAGTGGCGCAGCGTGCTGCCGGTGCCGCCGCGGGACTATCAGATCAGCCTCGATGTGCGTGCCGTGCGCAG
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| Amino Acid Sequence |
>type VI secretion protein
MALCLTITSYHKITPGQCPEMRLETGAITLGRAADNDWVLPDPERLVSARHCVIQFKDGRYFLTDDSTNGVELVRAGIRLRRGNSEQLLDGEVIRIGEYE IQARIDVNLPGALEGEPQVHSFEALMANQVAAPAVPAPPISGAPAAFLQGASNHDTLPDLFDFLGPSSVPPVSQPDHVPAQQHDFRPPTPVVAPAPAAEP AAPGMIPEDWNLFGSAPAPTPTPTPTPTAPPAPAVPAVPAQPAASEPVAAPAPAASSDALLQAFLRGAGIEHLRIDAADAAAQMEAIGQSYRLMVEGLID VLRARSSLKGEFRMQQTTIAPVQNNPLKFAPNADEALLLLLRHGNQAFMAPDQAVRESFDDVRAHQLAVMAGVQAAIKHLLACFQPARLEQRLAPAAGLA KLFGGSRQAHCWQQFTELYGQISREAEDDFQELFGREFSRAYEAHSSRLQRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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