Pseudomonas sp. FGI182, C163_RS17100

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. FGI182, complete genome. [Details]
DNA Sequence Upstream of Gene
TGCACCAACCGCGACCTGCCGCTGGCGTTGGGCATCGATGACATCAACGTGCTCACCGAGATCACGCCGCCCCTGGCCACCTATACCAACATCCGCGCCC CCACCCGCCCCTACCGGCCGGTGCTGGATGGCCAGTTGCAGTGGGCCCTGATCTCCAACATGTCGCTCAACTACCTATCGCTGCTCTCGGCCGAGCCGCT GAAAGCGGTCATCCGCGCTTACGACTTCGCGGCCTTGCACGACATCCAGCAGACACGCACCACCCGCAAACGCCTCGATGGCATCCGTGACGTGCAAACA GAGCCGCTGGACTGGCTGATCAAGGGCCAGCCCATTCGTGGGCTGCGCACGCAGCTGAAGCTGGATCAAAGCGCATTCCTCTGCGAAGGCGACCTGTACC TGTTCGGTTGCGTGCTCGCGCACTTCTTCGCCCTGTACGCCAGCATCAACTCCTTCCACCAACTGGAAGTGATCAACACCACCAACAACGAGCACTACAC
DNA Sequence for Gene
>C163_RS17100
ATGGCCAATCCAGACCGGCAAACAACCGCTGATCTAGCCGACAAGCTGTTCGCCGAGGCGCACCAGTACAACTTCTTCCAGTTGCTGGAACGCCTGCACG GCTTGCACGGGGATGACCTGGAACCACGCTGGCCAGATCAGGCCACCCGGCTGAGGGTGCGGCTTGCCAGTGACCCGCGGCTGAGTTTTCCGGTTTCCGA CATATCCAAGGTCGAACGCATGCCCGGGGAAGCTGACCGCTATCGCGTGTGCACCACCTTCATGGGTTTGCATGGCACCGACTCGCCGCTGCCCACCTAT TACCTGGAGCAGGTGGCATACGAGCATGCACAGGGCATCGGTGTGCGGCCGGCGTTCTTCGATTTCTTCAACCACTACCTGCTCAGCCTGCTGCATCGTA TCTGGCGTAAATATCGCTACTACATCCGCTTTCAGCCGGGAGCTACCGATGGGTTCTCCCAGTACATCTTTGCCCTGCTCGGGTTGAATGACAGACAGTT GCGCGGGGACACGGCACTGCCGTGGAGCCGGCTGCTCAGTTTCGCCGGCGTCATTGCCAGCCGCAGCCGTGCGCCGGGCACGGTCGCCGGCATCATCGCC CACTGCTTCGACTTGAAGCAGGTACAGATCCGCGAGTTCGAAACCCGCTCGGTCCCCACTGCCGCCAGGCAACTGGTCAGCCTTGGCCGCAGCAACGGCG AACTGGGCAGCACTTTCATGGTGGGCAGCCGCACGCGAACACGCAGCAGCAAGTTCACCATCGTGATCAGCGAACTCGACCCAGCGCAATTGCGTGACCT GCTGCCCAGCGGCATCAACTTCGGCCGGTTACGGGCATTGATCGACTTCCTGCTGCGTGATGGCCTGGCCTACGACCTGGAGCTGCGCCTGAAGCAGAAC GCACTGCCGCCCTTCTGCCTGCACCGTAGCCTGGGTGCCTACCTGGGCTGGACCAGCTTCGTCGATGACCGTCACGGCCTGAGCAGCCCTGTGGTGCGGT TCCGGGGGCGCTCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCATTTTGACCTTGAGCATCACCAACCTGGATCAGTTGCAACACAACGTCACTGCCCGACATCAGTTCGATTGCACAGGCGGCACCATCGGTAGCGCGAA GGCCACCTGGCAAATCAACGACCGTGACCAGACCGTTGCACCGATCCATTGCGAGATCCGCTGGATCGAGGGCAGCTTCTGCGTCATCGATCGCTGTCAG CGTACCTACCTGAACGACAGCCTCCACAGCCTGGGGTCGCTTACCGCCAGGCGGCTGCTCGAGGGTGACCAGTTGCGCATTGGCGCCTATCGGCTGCAGG CCCAGCTTGCGCAGGCCGATGCACGCTCACTGGAGGACCTGTTCAGCCCTGAACAGACAACCCTTGATCACTGGTTGCTGGATGTTCCACCCGAGGCTTG TCATGCCGCTGCAACCGCCCCCAAGACTGTCGCGGACATCTGCTCGGCATTCGAACCGGGCATGGGCAACGACCCCTTGGCGGCACTGGACACAGAGGCA
Amino Acid Sequence
>type VI secretion protein
MANPDRQTTADLADKLFAEAHQYNFFQLLERLHGLHGDDLEPRWPDQATRLRVRLASDPRLSFPVSDISKVERMPGEADRYRVCTTFMGLHGTDSPLPTY YLEQVAYEHAQGIGVRPAFFDFFNHYLLSLLHRIWRKYRYYIRFQPGATDGFSQYIFALLGLNDRQLRGDTALPWSRLLSFAGVIASRSRAPGTVAGIIA HCFDLKQVQIREFETRSVPTAARQLVSLGRSNGELGSTFMVGSRTRTRSSKFTIVISELDPAQLRDLLPSGINFGRLRALIDFLLRDGLAYDLELRLKQN ALPPFCLHRSLGAYLGWTSFVDDRHGLSSPVVRFRGRS
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site