Pseudomonas sp. FGI182, C163_RS13695

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00478
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR43003 DNA-3-METHYLADENINE GLYCOSYLASE - - 75 293 6.5E-31
SMART SM01009 AlkA_N_2 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 8 124 5.5E-44
Pfam PF06029 AlkA N-terminal domain IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 8 124 7.3E-33
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 127 239 5.1E-20
SUPERFAMILY SSF55945 TATA-box binding protein-like - - 8 105 1.32E-24
Gene3D G3DSA:3.30.310.20 - IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily 9 124 1.2E-31
SMART SM00478 endo3end IPR003265 HhH-GPD domain 134 289 2.3E-5
Gene3D G3DSA:1.10.1670.10 - IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal 242 292 5.9E-9
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 113 287 1.06E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.