Pseudomonas sp. FGI182, C163_RS08505
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FGI182, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGATGCCTTCGATAAAGCCCACCGCCACTACCGAGGTGCCGAGCACGGTGACCATGTACAGCGGCAGCAGTGCGTGAATCATTTCCGAGGAAATGTC CATGAACATCGACACGAACCCCAGCGCCCAGACACTGCGAGGGATCTTCGACAGGGACCTGGTGGCGTTCGTGGCGTGGCTTTCTTCTTGGCTGCGCATC AGGAGGCTCGGCAGAGAGGGCTACGTTCGAAACTGTAGGAGCCGTCACGCAGGATGCAAATCGGACAGGTGTATGCAAGCAACAGCGCGCATAGCCGGGC TGCGCCGGCAACGCTGTCGTGTCAGCAAAGTTCCGTTACAAACATGTAAACTTCGTAAATAAGATTTAAACTCATTTGCGAATCTCTATATTTACCATCC CTGTTGGCCACCAAACTGTGTTTGCGAGGCCGGTGGGCGAGGGCCCCCGGTTTCCGACAGGGATGTGCCGTTTCGCTCATGAATCGCAGGAGATGTACCC
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| DNA Sequence for Gene |
>C163_RS08505
ATGCAGTGCAAGACTTCACCCAACAGCCTGGCCCTGGCGTTCGTCGCGCTGGCGTCACCGGCCATGGTGGCCACCGTGGCCCAGGCCGAAGAACAGCGCA CGGGTGAGGTGCTGGAGATGCCGGTTGCCGACAACGCGCTGGTGATTCAGGACACCCTGGTCACCGCCGAGCGCGAGGCACGCCAGGCCCTGGGTACGTC GATCATCACCGCCGAAGACATCAAGCGCCATCCGCCGGCCAATGACCTGTCCGACATCATCCGCCGCGAACCCGGGGTCAACCTGACCGGCAACAGCGCC AGCGGCGCGCGTGGCAACAACCGGCAGATCGACCTGCGCGGCATGGGCCCGGAAAATACCCTGATCCTCATCGACGGCAAGCCATCCAGCGCACGCAACG CCGTGCGCTATGGCTGGAACGGCGACCGCGATACCCGCGGCGAAACCAACTGGGTACCGGCAGAAGCGGTCGAGCGCATCGAGATCCTGCGTGGCCCGGC GGCCGCACGTTACGGTTCCGGCGCCATGGGCGGGGTGGTCAACATCATCACCAAGCGGCCCACCGACGAACTCAAGGGCAGCGTCAGCCTGTACACCCAG CTGCCGGAAGACAGCGCCGAGGGCGCCAGCCGCCGGGCCAACTTCAATTTGGGCGGCGGCCTGACCGACAACCTCGGCTTCCGCCTGTACGGCGGCCTGG CCAAGACCGATGCCGACGACCTGGACATCAATGCCGGGCATGCCACCAGTGCGCTGGTGGCCGGCCGCGAAGGCGTACGCAACAAGGACATCAATGGCCT GCTGAGCTGGAAGCTGAATGACGAGCACCGCCTCGAGGCCAGTGCCGGCTACAGCCGCCAGGGCAATATCTTTGCCGGCGACACCATGAACAGCAACGGC GGTGGTGACGTCGAGTTCGTGTCCAGCCTGTACGGCCACGAAACCAATGTGATGCAGCGCAGTACCTACGACCTGACCCACCTGGGCGATTTCACCTGGG GTACCAGCAAGACTGTGCTGGCCTACGAGTACGTGCGCAACTGGCGCCTCAACGAGGGCCTGGCAGGCCGCACCGAAGGTGCCCCCAATGCCGAAGGCGC CGCCATGTCGCGCCTGCGCAACACGCGCCTGAGCAGCGAAGTGAACCTGCCATTCGCCATGGGCAGCACCGAACATGTGCTGACCCTGGGCGGCGAGTAC CTGTACGAAGCGCTCAATGACCAGGGCTCGCTGCGCCCGCAAAGCTCGGACCCTACCGGTAACGACGGGTTGGTCGGTTTCGACCGCAGCAGCTCGAAGA TGACCGCCCGCAGCTATGCGCTGTTCGTCGAGGACAACATCATTGTCGGCGACACCACCATTACCCCGGGCCTGCGTTTCGACCACCACGAAACCTTCGG CGACAACTTCAGCCCCAGCTTGAACCTGTCGCACAAACTGACCGAAGCACTGTCGGTCAAAGGCGGTATCGCGCGCGCCTACAAGACCCCGAACCTGTAC CAGTCCAACCCCAACTACCTGCTGTACAGCCGCGGCAATGGTTGCAGCGTGCAGCAGACCAACAACGGTGGCTGCTACCTGCAGGGCAACGCCGACCTCA AGCCCGAGATCAGCGTCAACAAGGAAATCGGCCTGATGTACGACCGTGGTACCTGGCGCACCAGTGCCACGTACTTTCGCAACGACTACAAGAACAAGAT CGTCGGTGATACCGATGTGCTGTACACCATCGGCACCGGCAGCCGCGTGACCCAGTGGGACAACGCCGGCAAGGCGCGGGTGGAAGGTATCGAAGGCAAC CTGTTCATCGAGCTGACGCCGGCCCTGGACTGGAACACCAACCTGACCTGGATGCTCGACAACGACAACCGCGAGACCGGCGAGCCGCTGTCGATAATCC CGGAATACACCGTCAACACCACCCTCGACTGGCGCGCCACCGAGAAGCTGTCGTTCCAGGTGGCGGGTACCTACTTCGGCAAGCAGAAGTCGCCGACCTT CAACGAACGCACCCAGCAAGGCTACGACAAGACCGCGCAACAGGACGTGGAAGCCTACGGCCTGGTGGACGTGAGCGCCGGGTACAAGTTCAACGCCAAC TACGACGTGCGGGTGGGGGTGAACAACGTGTTCGACAAGCAGATCCTGCGTGGCGGCAACGCCAGTACTTCGGGCGCTAATTCCTATAACCAGCCGGGCA GGGCGGTGTTCGCTGCGCTGAACATCAACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCAAGGGGCCGCTGCGCGGCCCATTCGCCGGCAAGCCAGCTCCCACAGGGATCGCGCCAACTTTTAGAATTTGAGCAAGACAGTTGCTCCCACTGGTAC CACACAGTATTCGAACCCTGTGCAATCCCTGTGGGAGCTGGCTTGCCGGCGAATGGGCTGCACAGCAGCCCCGGATGCCACCGATCAACGCCAAGGAGCC CCCGATGATCAAAGCCCCCGCCTGGCTGCAGATCCTCTCCCGCAGCTTTGCCGCACTGCTCGGCGGCTATGCCCTCAGCTACGCCGCCAGCGCCTGCCTG GCCCGCATCCTGCCGCTGGCTGCCGCCGATGCGGTCATCGTCGCGACCCTGCCGGCCTTCATCTTCTACACCGCCGCCATCCTCTGGGCCTTCGCCTGCA GTGATGCCCTGCGGGCCTGGGCTCCGCTGGCTGTGGCCGTACCGCTTGCCCTGATCGGCTTCTGGCCGCAGGCACTGGAGTGGCTGGCATGAAGAACACC
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| Amino Acid Sequence |
>outer membrane receptor protein
MQCKTSPNSLALAFVALASPAMVATVAQAEEQRTGEVLEMPVADNALVIQDTLVTAEREARQALGTSIITAEDIKRHPPANDLSDIIRREPGVNLTGNSA SGARGNNRQIDLRGMGPENTLILIDGKPSSARNAVRYGWNGDRDTRGETNWVPAEAVERIEILRGPAAARYGSGAMGGVVNIITKRPTDELKGSVSLYTQ LPEDSAEGASRRANFNLGGGLTDNLGFRLYGGLAKTDADDLDINAGHATSALVAGREGVRNKDINGLLSWKLNDEHRLEASAGYSRQGNIFAGDTMNSNG GGDVEFVSSLYGHETNVMQRSTYDLTHLGDFTWGTSKTVLAYEYVRNWRLNEGLAGRTEGAPNAEGAAMSRLRNTRLSSEVNLPFAMGSTEHVLTLGGEY LYEALNDQGSLRPQSSDPTGNDGLVGFDRSSSKMTARSYALFVEDNIIVGDTTITPGLRFDHHETFGDNFSPSLNLSHKLTEALSVKGGIARAYKTPNLY QSNPNYLLYSRGNGCSVQQTNNGGCYLQGNADLKPEISVNKEIGLMYDRGTWRTSATYFRNDYKNKIVGDTDVLYTIGTGSRVTQWDNAGKARVEGIEGN LFIELTPALDWNTNLTWMLDNDNRETGEPLSIIPEYTVNTTLDWRATEKLSFQVAGTYFGKQKSPTFNERTQQGYDKTAQQDVEAYGLVDVSAGYKFNAN YDVRVGVNNVFDKQILRGGNASTSGANSYNQPGRAVFAALNINF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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