Pseudomonas sp. FGI182, C163_RS02880
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FGI182, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGTGGTGAAGAGTTCGCCATTGTCATGCCCAATACCGCGCTGGACGCGGCGCACAAGGTGCTGGACGAAATCCGCCGGCGCTTTGCCGAGATTCTCTA CCCGGCGCAGCCGCGGGACTTGCAGTGCACTTTCAGTGCCGGGGTGGTGCAAATGGATGAGGGGTTGGATGCGCTGACCATGGCCAGTGCGGCGGACGAG GCGCTGTATCGGGCCAAGCATGCCGGGCGTAATTGCGTGGTGCGTGTAGAGCCCTGAGTTCTTCGCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCC ACAGGGATTACGCTGCATTCAGGTCTGGTAGATATCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCAGTACAGGCAATACAGATACAGGCACTGTGCCA CTTTTTTTATGGCGCCAACCCCCTGTCGTCATCACCCCGTCACAAAATCGCAATAACTTCAGCCACCGACCTCTCCCCTCCCCGCAGGAAGCTCGCGGCT
|
|
| DNA Sequence for Gene |
>C163_RS02880
ATGCGCCTGAAGTGGCTGACCAATTTCAACACCCTCTTGCTGGTAACCGTGTGTATCGCCCTGGGCGCCACCCTTTGGTGGTCGCAGCGGGCCCTTGAGC GCCCCTACCAGTTGATGGAGCGCTACCTGGGCCTGTCCCAGCAGTTCCAGAACCAGGCGGCCCGCAACATCCAGGCGTACCTGGGCAGTGGCGATGCCCT GCGCCACGCCGCGGCGATGGAGGCCAACCAGCAACTGCAGGCCGCGCTGGCCGAATGGCCCAGCGAACTGGCCGACAAACTGCGCCCCAGCCTGGACAGC CTGCAAGCCTTTACCGCCGAGGAGCTGCTGGCCGCCGGCAAGCTGGCCGGTGACCCGCAAGCCCTGCTGCTGCAGGCCGAGCGGGAACTGGGTGCCAACT TCGAACAACTGGCCGGCTACGCCCGCGACAGCGGCAGCGCCGACGCCAACCGCTACCTGGTGCCACTGCTCGACGCCACCGTGCACCTCGGTCGCCTGTC GCTGGCCCGGGACAAGCTGGTCAGCAGCGGCCGCCCGGAGCTGGCCGACGAAGTGGAGCGCGAGCTGCAACTGATCCGTGCACAGGCCCAGGCGATCGAC GCCTTGCCCTTGCTGGGCGTAACCCGTAGCGCCGAATCCGGTGCCGACGACTTCGCCGCGATGATGGGCCTGGAAACCCAGGCCAGCGCCCAGCAGGAAG ACATTGCCGTCGGCCTCAAGCGCGAACTGCAGAGCCTGCTCGGCCGTTACCCGGCCGAACTGCAGCGCACCCGCGAACAGATCGAGCGCCGCGTCGCCCT GGCGGCCAGCACCGGCCAACGCCTGGAGGCCGTGCAACAGGCCATTGCGGCGCTGGAGCCCGAGGTACGCGCCCAGCATGGGAAAATTGCCGGCGAAGTG CGCATCATCCAGGGCCTGATGATCGGCCTGATCCTGCTTATCGCCCTGCTGATCGACACCTTGCAACGCCGCCTGGCGCGCACCCTGACCGGCCTGGCCC CGGCCCTTTCGCGCTGGGCCGAGGGTGACTTCGCCGAGGCCATCGCCCTGGGCAGGACCAACCGCGAACTGCGCGACATCCAGGAATCGCTCAACCGCCT GCGCCAATACCTGGTGGAATTGGTCGGCACCATCCGCCACAACGCCGAGCAGGTGGCTGGCAGCAGCCACGCCCTGGCCGGCATGAGCGCCGCCCTGCAT GACGGCGCCGAACGCCAGGCCGGCGACACCGGGCAGATCCGCGATGCCTTGGGTGAGCTGGAAGCAACCATCCAGCAAGTGGCCGGCGACGCCAGTGCCG CAGCCGACGCCAGCCGCGATGCCGGGCGTGCAGTGGAGCAGGGCCAGGCGGTGATCGGCCAGAGCCTGTCGGGCTTGCGTGAGTTGGTCGACGAGGTGCA GGGCAACGCCCGCATGATCGAACAACTGGCGGAGGAGTCGGCCACCATCGGTGGTGTGCTGACGGTGATCCGCTCGATTGCCGAGCAGACCAACCTGCTG GCGCTGAATGCCGCGATCGAAGCGGCCCGCGCCGGTGAGATGGGCCGTGGTTTCGCCGTGGTAGCCGATGAGGTGCGTTCGCTGGCACAGCGCACCACCG GAGCGACCGGCGAGATTCAGGCACTGATCGACCGCTTGCAGCAGGCAGCCAGAAGTTCGGTGGCCGGGATGCGTGCGCAGCTTGAGCATGCCGAGGCCAC GGCCAACCAGGCCCAGGCGGCGGACGGGGCGCTGGACGAGATCGTCTGTGCCATTCGCACCATTTCGGACACTGCGGTGCGGATTGCCGATGTCACGGCG CAGCAGAGTGGTGCCGTGAGCGAGATTCGCGACCACAGCGAGCGGATTCATGAGCTGGGTGAGGACAACCTGCAGCGCATTGGCGAGGGGCGCGAGCAAG GCGAGCAGCTGCTGAGCCTGGGTGGTGAACTGAACCGGGCGGTGCGGGCCTTCAGAGTCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTTGGCCTGTACCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGAACCTCGCTGCTTCAGGCTTTTCGTTGACATGTACCGGCCCTATCGCCGGTACAG GCATCCCATCGAACCCAGCAGCAGCGCGGTCCTTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAGCACATGAGCCAGCGGCCATGTGTCGC CCCCGCCACCAGCATGGCCCCAACCTGCACCAACTCCGCTATCATGCCCAGCACGTTCCACCTCGCGAGTCCGCCATGCGCCGCCTGTTTTTCCTGCTGT TCCTGCTGCTGGCCAGCCCTGCCTTCGCCACGGGCCTGCTCGACAACCGCCCCAGCGCCACCCTCGGCGCAGCTTCGCTGGCCAACAACGCCGACTTCCT GCCGGTACACGAGGCCTTCAAGCTCAGCCTGGTCCAGGCCGATGCGCAAACCATCAAGCTGCGCTTCGTCGCTACCGACGGCTACTACCTCTATCGCCAC
|
|
| Amino Acid Sequence |
>chemotaxis protein
MRLKWLTNFNTLLLVTVCIALGATLWWSQRALERPYQLMERYLGLSQQFQNQAARNIQAYLGSGDALRHAAAMEANQQLQAALAEWPSELADKLRPSLDS LQAFTAEELLAAGKLAGDPQALLLQAERELGANFEQLAGYARDSGSADANRYLVPLLDATVHLGRLSLARDKLVSSGRPELADEVERELQLIRAQAQAID ALPLLGVTRSAESGADDFAAMMGLETQASAQQEDIAVGLKRELQSLLGRYPAELQRTREQIERRVALAASTGQRLEAVQQAIAALEPEVRAQHGKIAGEV RIIQGLMIGLILLIALLIDTLQRRLARTLTGLAPALSRWAEGDFAEAIALGRTNRELRDIQESLNRLRQYLVELVGTIRHNAEQVAGSSHALAGMSAALH DGAERQAGDTGQIRDALGELEATIQQVAGDASAAADASRDAGRAVEQGQAVIGQSLSGLRELVDEVQGNARMIEQLAEESATIGGVLTVIRSIAEQTNLL ALNAAIEAARAGEMGRGFAVVADEVRSLAQRTTGATGEIQALIDRLQQAARSSVAGMRAQLEHAEATANQAQAADGALDEIVCAIRTISDTAVRIADVTA QQSGAVSEIRDHSERIHELGEDNLQRIGEGREQGEQLLSLGGELNRAVRAFRV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|