Pseudomonas sp. FeS53a, SZ55_RS18260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0004888 | transmembrane signaling receptor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006935 | chemotaxis |
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 471 | 491 | - |
| CDD | cd06225 | HAMP | - | - | 217 | 261 | 5.80334E-8 |
| CDD | cd11386 | MCP_signal | - | - | 308 | 507 | 8.71595E-52 |
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 49 | 541 | 8.5E-121 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 211 | 253 | 3.0E-9 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 408 | 437 | 1.8E-8 |
| FunFam | G3DSA:1.10.287.950:FF:000001 | Methyl-accepting chemotaxis sensory transducer | - | - | 214 | 543 | 1.1E-97 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 235 | 542 | 3.01E-76 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 214 | 266 | 5.6E-8 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 327 | 509 | 3.2E-44 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 281 | 542 | 5.2E-81 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 295 | 324 | 1.8E-8 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 214 | 543 | 2.3E-77 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.