Pseudomonas sp. FeS53a, SZ55_RS18180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold7.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGCTGATGATGACTATCGCGGGAAACGATCCCGTATCGTTTTTTCCCGATATATAGTTCGCTCCATTCCGATATGACTGGTGGAGACGGCCATGACCGA CACCCCCGACAGCCTCGACATCGACCTGGGCGAGATCCTCAAGGCCCTCGCCCACCCGGTACGGCGCGACATGCTGCTGTGGCTCAAGGAGCCGGAGCGC TACTTCGTCGAGCAGGACCACCCGTTCGAGATCGGCGTGTGCGCCGGCAAGTTCGACCAGCGCACCGGGCTCTCCCAGTCCACCGTATCGGCCCACCTGA CCACGTTGCAGAAGGCTGGCCTGGTGACCAGCCGACGCATCGGCCAGTGGAACTTCTTCAAGCGCAACGAGGCCGTAATCGAGGCGTTCCTGCAGCGGAT GAGCACCGAACTCTGACCGCGGTACCCGATCAAGAGTCCCGCCCGGCGGGCTCACCCCGGCCCCTTTGCCACCTGCCCCCATTCACTCAGGAGCTGGCCC
|
|
| DNA Sequence for Gene |
>SZ55_RS18180
ATGCCAACCGCGCTTCTCGTCCTGGCTTTGTCCGCATTCGCCATCGGCACCACTGAATTCGTGATCATGGGCCTGCTGCCCGATGTCGCCACGGACCTGT CCGTGAGCATCCCCGTCGCCGGCTGGCTGGTGACCGGCTACGCCCTGGGCGTGGCGGTCGGTGCACCGTTCATGGCCATGGCCACGGCGCGCTTCCCTCG CAAGGCGGCACTGCTGGCGCTGATGGCGATCTTCATCCTCGGCAACCTGCTGTGCGCCACGGCACTGAACTACGACCTGCTGATGCTGGCGCGGGTGGTG ACGGCGCTCTGCCACGGGGCCTTCTTCGGCATCGGCTCGGTGGTGGCCGCCAGCCTGGTACCGCCGAACCGCAAGGCGTCGGCGGTGGCGCTGATGTTCA CCGGGCTGACCCTGGCCAACGTGCTGGGCGTGCCCCTGGGTACCGCGCTGGGCCAGGTGGCGGGCTGGCGCTCGACCTTCTGGGCGGTGACGCTGATCGG CGTGGCGGCCTTCATCGGGCTGTGGCGCGTGCTGCCACGCCAGGATGACGAAGAGGCCGCCGACATGCGCGCCGAGCTGGCCGCCCTGCGCGGGGCCGGG CTGTGGCTGGCGCTGTCGACCACGGTGCTGTTCTCGGCGGCGGTGTTCTGCATCTTCACCTACGTGGCGCCGCTGCTGGGCGAAATCACCGGGGTGTCGC CGCGCGGCGTGACCGGCACGCTGCTGCTGATCGGCCTGGGCCTGACCCTGGGCAACTTCATCGGCGGCCGCCTGGCCGACTGGAAGCTGGCGCAGACGCT GATGGGCGTGTTCATCGCCCTGGCCGTCACCTCCACCGTGGTGCACCTGGCCAGCCCGTACCTGATTCCCATGGAGATCACCCTGTTCCTCTGGGCCACC GCCGCCTTCGCGGCCGTGCCGGCCCTGCAGGTGAACGTGGTGGCGTTCGGCGCCGGTGCGCCGAACCTGGTCTCCACCCTCAATATCGGCGCCTTCAACG TGGGCAACGCCCTGGGCGCCTGGGTCGGTGGCGTGGTGATCGAGCAGGGCCTGGGGCTGACCCGCGTGCCGCTCGCCGCTGCCGTACTCGCCATCCTGGC GCTGGTCGCCACCCTGCTGACCTTCAGCCAACGCAAACCCGAGCTGGAAACCGCTCTCGACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GACGAGGTGTTCAAAATGGCAACATTGTTCGATCCGATCAAAGTGGGCGACCTGGAACTGGCCAACCGCATCATCATGGCCCCCCTGACCCGCTGCCGCG CCGACGAAGGCCGCGTACCCAACGCGCTGATGGCCGAGTACTACAGCCAGCGCGCGTCCGCCGGCCTGATCATCAGCGAGGCCACCGCCGTGACCCCGAT GGGCGTCGGCTACCCCGACACCCCCGGCATCTGGAACGACGACCAGGTCAAGGGCTGGAGCAACGTGACCAAGGCCGTGCACGCCAACGGCGGCAAGATC GTCCTGCAACTGTGGCACGTGGGCCGCATCTCCGACCCGAGCTACCTGGACGGCGAAGCCCCGGTGGCCCCCAGCGCCATCGCCGCCAAGGGCCACGTGA GCCTGCTGCGCCCGCTGCGTGACTACCCGGTGCCCCGCGCGCTGGAGACCGAGGAGATCGCCGACGTCATCGAGGCCTACCGCCTCGGCGCGGAGAATGC
|
|
| Amino Acid Sequence |
>arabinose transporter permease
MPTALLVLALSAFAIGTTEFVIMGLLPDVATDLSVSIPVAGWLVTGYALGVAVGAPFMAMATARFPRKAALLALMAIFILGNLLCATALNYDLLMLARVV TALCHGAFFGIGSVVAASLVPPNRKASAVALMFTGLTLANVLGVPLGTALGQVAGWRSTFWAVTLIGVAAFIGLWRVLPRQDDEEAADMRAELAALRGAG LWLALSTTVLFSAAVFCIFTYVAPLLGEITGVSPRGVTGTLLLIGLGLTLGNFIGGRLADWKLAQTLMGVFIALAVTSTVVHLASPYLIPMEITLFLWAT AAFAAVPALQVNVVAFGAGAPNLVSTLNIGAFNVGNALGAWVGGVVIEQGLGLTRVPLAAAVLAILALVATLLTFSQRKPELETALD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|