Pseudomonas sp. FeS53a, SZ55_RS11625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold53.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCAGCAGCTGCTCGATGCGGTGGCGCATCTCGGCGGCGGCCTTGTTGGTGAAGGTCACCGAGAGGATGGAGTGAGGCGAGGCGCCCTCGGTGAGGATC AGCCAGGCGATGCGATGCACCAGCACACGGGTCTTGCCGGAGCCGGCGCCGGCCAGCACCAGCTGGCGGCCCAGCGGAGCGGCCACAGCCTGCACCTGGG CATCGTTGAGGGACGCGATGAGGAGTTCGGGGTCGTTTTGCATCGCGGCATTCTAGGGGGGCGGCCCAGGCAGGGCAAACCGATGACCGGGCGGTCGGCC AGACGGCACGCAGCCTGCGTGCCAGAGCGCCCGCCAAAAGTTGGGAGGCGCAAGGGAGAAAGGCATCACATAACCCTTTGGCGACTCCGCAGGCTCGGGT AAGCTCCGCCGACGCCTAGGCAACCATTACAAGAACATCGCCTATGACCGCGACTCCCAACCAGGCTTCCCTTGCGTTTGCCGACGACGATTCCGCGCCG
|
|
| DNA Sequence for Gene |
>SZ55_RS11625
CTGCGCCCCCCGTTCGCCGCCGATCTGGCGATCGAGCGCACGCGCCTGCTCTACCAGGGCTCCCGGGTCCCGACCCTGTTCATGCTGCTCAACGGGCTGG CCTGTGCCTGCCTGCTGTGGCGCTCGGAACTGGCGGCCCTGCTCTCCGGCTGGCTGATCTGGCTGGTCCTGCTGGCCGTGCTGCGGCTGACCCAGGTCGC CGCCTTCAACCGCGCCCTGCCCTCGCGCCAGGCCCAGCCGCACTGGCACCGCACCTTCCTGCTCGGTGCCGGCGCCTCGGGGCTGACCCTGGCCTTCCCG GTGGTCTTCCTGGTGCCGGCGGACGCCTTCCTGCAGCAGGCGCTGGTCTACGGGCTCGTCGCCGCCGCCATCCTCTCCGCCAGCGTCGCCTATGCCGTCA GCCTGCCGGCCTTCCTCGCCTTCGCCCTGCCCTGCCTGCTGCCCACGGTCAGCTGGCTGCTCGCCAGCGGCCACCCGCTGCTGCGCGGCTGGGGCCTGCT GAGCCTGACCCTGCTGGCGGCGCTGATGGTGGTGGCGCTGCAGGTCAACCGCCTGGTGCGCAACAGCCTGCTGCAGCGCCTGCAGAACCAGGCCCTGATC GACAACCTGGAGCACGCCAAGAGCCGCGCCGAAGGGCTCAACGCCGAACTGGCCCGCGAGGTGGAACAACGCCGCCGTGCCGAGCGGGAGCTGCGCGGTG CCCACGACGAACTGGAGATCCGCGTCGCCCAGCGCACCCTGGAACTGGCCGACGCCACCCACGCCCTGGCCAAGAGCGAGGCACGCCTGGCCCTGGCCCT GGAGGCCAGCGAGCTGGGCCTGTGGGACTGGAACCTGGAAACGGACGAGGTGCACCACACCCAGCTCAAGGCCATCTTCGGCCTGGAGAGCGACGAGGTG TCCCGGGTGCTCAGCGACCTGCGCCCCTGCCTGCACCCCGACGACGTACCGCTGCTGCGCCGCGCCCTGGTTGACCACCTCAAGGGCCGCAGCGAGGACT ACGCGGTGGACTACCGCGTGCGCCACCGCGACGGCCGCTGGATCTGGGTGGAAGACCGCGGCCGCGCCGTGGAGCGCGACGCGCGCGGGCGCGTGCTGCG CATGGTCGGCACCCGCCGCGACGTCACCGCCCGGCGCCAGGCCGAGGAGCAGCAGCGCCTCGCCGCCACGGTGTTCGAGGCCGCCAGCGAAGGCATCGTC ATCCTCGACCCGGACTACCGCCTGCTGGCGGTCAACCAGGCCTTCACCCAGGTCACCGGCTACCGCGCCGAGGAAGTGCTCGGCCGCGCCGTGGCGGAAA TCAGCGGCACCCGCGAGAGCCGCCGCCAGTACCACCTGATCCACCAGCAGCTGGAGCACGACGGCTGCTGGCAGGGCGAGCTGGTGGACACCCGCAAGAA CGGCGAGCTCTACCCGCAGTGGCTGCAGCTCAACGTGGTGCGCGACTCACGCGGCCAGGCCAGCCACATCGTCGGCTTCTTCTCCGACCTCTCGGCCCGG CGCGAGGCCGAGGAGCGCCTGCGCTACCTGTCCCACTACGACGACCTCACCGGCCTGGCCAACCGCACGCTGTTCCGCGACCGCCTGCACCAGGCCAGCG AGCGGGCCCGCGAGCACGGCCACGGCCTGGCGCTGCTGCACATCGACCTGGACCGCTTCAAGGTGCTCAACGACAGCCTCGGCCACGAACTGGCCGACCA GCTGCTGCGGCAGATGGGCCGGCGCCTGGCCCAGGCCGCGCCGGAGGCAGACACCATCGCGCGGCTGTCCGGCGACGAGTTCGCGCTGATCCTCGACCGC TACGGCAGCCTCTCCAGCCTCGCGCGCACCGCCAGCCGCCTGCTGGCCAAGCTGCGCACGCCGATGACGGTGGGCGGCGAGGAGCTGGTGGTCAGCGCCT CCCTGGGCATTAGCCTGCTGCCGGACAACGCGCGGGAGATCACCACCCTGGTCAGCCAGGCCAACATGGCCATGCAGCACGCCAAGCACCTGGGCGGGAA CACCTTCCAGTTCTTCACCGACAACCTGCAAGCCTGCACCCTGGAGCGCCTGCAACTGGAAACCCAGCTGCGCAAGGCCATCGACGAGGGTCAGCTGGAG GTCTTCTACCAGCCCAAGCTGTGCCTGGCCGACGACAGCCTCAACGCCGCCGAGGCCCTGGTGCGCTGGCGCCACCCGCAGATGGGGCTGGTCCCGCCGG GGGACTTCATCGGCCTGGCCGAGGAAACCGGGCTGATCGCCCCCATCGGCGAGTTCGTCCTGCGCCAGGCCTGCCTGCAGGCCCGCGACTGGCAGCGCCA GGGCGTAGCGGACATCCGCGTCTCGGTGAACCTCTCCGGCCACCAGCTGCGCCAGGGCAACCTGGTGGCCCTGGTGCGCCAGGTGCTGGCGGAAACCGGC CTGCCGCCGCGCCTGCTGGAACTGGAGCTGACCGAGAGCCACCTGCTGGAGAACGTCGAGCACGTCATCGCCACCTTCCACCAGCTGCGCGAGTTGGGGG TGAAGCTGGCCATCGACGACTTCGGCACCGGCTACTCGTCCCTGAGCTACCTCAAGCGCTTCCCGGTGCACTACGTGAAGATCGACCAGACCTTCATCCG CGACCTGTCGCTGGGCGGCGAGGATGCCGCCATCACCCGCGCCATCATCGCCATGGCCCACGGCCTGGAACTGAAGGTGGTGGCCGAGGGCGTGGAGACC ACCGAGCAGCTGGACTTCCTCAAGGAGCAGGGCTGCGACGAAATCCAGGGCTACCTGCTGAGCCCGCCGGTGGAGGCCTCGGCCTTCACCGCGCTGCTCC GCGAGCAGAGCGCTACGCTGTGGCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGGCTCCGGCAGGTCGCGCAGCAGCAGCCCGTGCTCCAGGTCGAGGTCGGCAGGCAGCGGGATGTAGAGGACGTGGCCGTCCCCCGGCGCCACCTCACG GCGGCTGCCATCGCCGGCCTGCAGCCCGTGGAGGATGAAACCGAGGTTGCCGGCGGGGGTCATCAGCTCCAGGCGGTCGCCCACCTCGAAGCGGTTCTTC ACCACCACCTCGGCCAGTTCGCCCCGGCGCACGCCGGTCAGCTCGCCGACGAACTGCTGGCGCGACGGCCGCGAGCTGCCGAAGGCGTAGTTCTGGTAAT GATCGTGGGTGTGCCGGCGCAGGAAGCCTTCGGTGTAGCCCCGGTTGGCCAGTGACTCCAGGCGCTCCAGCAGGCGCGGCTCGAAGGGCCGGCCGGCCAC CGCGTCGTCGATGGCCTGACGGTAGGCCTGGGCCGTGCGGGCCACGTAGAAGTGCGACTTGGTGCGCCCCTCGATCTTCAGCGAATGCACCCCCATGGCC
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MRPPFAADLAIERTRLLYQGSRVPTLFMLLNGLACACLLWRSELAALLSGWLIWLVLLAVLRLTQVAAFNRALPSRQAQPHWHRTFLLGAGASGLTLAFP VVFLVPADAFLQQALVYGLVAAAILSASVAYAVSLPAFLAFALPCLLPTVSWLLASGHPLLRGWGLLSLTLLAALMVVALQVNRLVRNSLLQRLQNQALI DNLEHAKSRAEGLNAELAREVEQRRRAERELRGAHDELEIRVAQRTLELADATHALAKSEARLALALEASELGLWDWNLETDEVHHTQLKAIFGLESDEV SRVLSDLRPCLHPDDVPLLRRALVDHLKGRSEDYAVDYRVRHRDGRWIWVEDRGRAVERDARGRVLRMVGTRRDVTARRQAEEQQRLAATVFEAASEGIV ILDPDYRLLAVNQAFTQVTGYRAEEVLGRAVAEISGTRESRRQYHLIHQQLEHDGCWQGELVDTRKNGELYPQWLQLNVVRDSRGQASHIVGFFSDLSAR REAEERLRYLSHYDDLTGLANRTLFRDRLHQASERAREHGHGLALLHIDLDRFKVLNDSLGHELADQLLRQMGRRLAQAAPEADTIARLSGDEFALILDR YGSLSSLARTASRLLAKLRTPMTVGGEELVVSASLGISLLPDNAREITTLVSQANMAMQHAKHLGGNTFQFFTDNLQACTLERLQLETQLRKAIDEGQLE VFYQPKLCLADDSLNAAEALVRWRHPQMGLVPPGDFIGLAEETGLIAPIGEFVLRQACLQARDWQRQGVADIRVSVNLSGHQLRQGNLVALVRQVLAETG LPPRLLELELTESHLLENVEHVIATFHQLRELGVKLAIDDFGTGYSSLSYLKRFPVHYVKIDQTFIRDLSLGGEDAAITRAIIAMAHGLELKVVAEGVET TEQLDFLKEQGCDEIQGYLLSPPVEASAFTALLREQSATLWR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|