Pseudomonas sp. FeS53a, SZ55_RS17515
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 340 | 499 | 3.61E-44 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 324 | 500 | 5.3E-64 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 337 | 497 | 1.05724E-60 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 335 | 496 | 3.1E-47 |
| CDD | cd12914 | PDC1_DGC_like | - | - | 57 | 178 | 1.61559E-23 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 322 | 500 | 5.3E-55 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 331 | 499 | 6.8E-48 |
| CDD | cd12915 | PDC2_DGC_like | - | - | 183 | 278 | 1.40834E-17 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 26 | 178 | 5.1E-33 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 330 | 500 | 7.3E-51 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 181 | 269 | 5.4E-18 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 310 | 502 | 9.3E-72 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.