Pseudomonas sp. FeS53a, SZ55_RS24490 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold4.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATGCCTGCCAGTATAGGCGCCGCGCAGATGCCGGAGATTATGCTGATCAATAACTGTGCAATCAGCTGAAGTGTACCGTCACTTACAACGAACGCTACG ACCAGACCTGGGATCATGCTGATTGCCTGGTTGACAGCAGAGTAGACGACCATCCCACCAATCAGCAGACCTTTCAGGCCATGAGTAAGACGCCAGCTTT CGCTCAGGATATCTCCGATGTGGAAATCATAGCCTCGCGTAAGCGCCTCTTCGATGCTGGGAGTAGTGCCTGCTGGGGGCTGCTCAAGCAGTTCACTGGT TGGGATTGAATAAGGGTTCTGCTGGAGTTCGCTCATGACGCTTCCCTGTGCCTTGGGCCTGGATATGAATGGTGGGCGAGTTTCTGGAGTTGTCCGGGCA ATTGCAATCGGCTGCATCACGATTTGGCGATTTGCCTTGGGAGGGGGGCTGTTAGACTTCCGGCCCATTGCGACCCTGCGCCCGGATTCAAGGAGGCGGC
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| DNA Sequence for Gene |
>SZ55_RS24490
|sbcB
GTGACCCCCAGCATCTTCTGGTACGACTACGAGACCACCGGCATCAACCCGCGTTGCGACCGGGCCATCCAGGTGGCCGGCATCCGCACCGACGAGGCCC TGAACGAAGTCGGCGAGCCGGTGAACCTGTATTGCCGCGTCAGCGACGACATCCTGCCCCACCCGGCGGCCTGCCTGGTGACCGGTATCCTGCCGTCGAC CCTGCAAGGCAAGGGGCTGGACGAGGCAGCCTTCATCTACCGGGTGCATGCCGAGCTGTCGCGCCCGGGCACCTGCGGCGCGGGCTACAACACCCTGCGC TTCGATGACGAGGTGACCCGCTACAGCTTCTACCGCAACTTCATCGACCCCTATGCCCGGGAATGGCAGGGCGGCAACAGCCGCTGGGACCTGATCGATA CCCTGCGCACGGCCTATGCCCTGCGGCCGGAAGGCCTGCAGTGGCCCACCGAGGAGGGGCGGGTGACCCTGCGCCTGGAGCGGCTGACTGCTGCCAACGG CATCGACCATGGCCAGGCCCACGACGCGCTGTCCGACGTGCGTGCCACCATCGGCATGGCCCGTCGGGTGCGCGAAGCCCAGCCCAAGCTGTACGACTAC CTGTTCCAGCTGCGCAGCAAGCACAAGGTGATGGAGCAGATCCGCCTGATGCAGCCGCTGGTCCACGTATCGGGCCGCTATTCGGCGGAGCGTCATTTCC TCGCCGTGGTGCTGCCGCTGGCCTGGCACCCGCGCAACCGCAACGCCCTGATCGTCTGTGATCTGCAGGTGGAGGTTTCGCCCTTGCTGGATCTGGATGC CGAAACCTTGCGCGCCCGTCTCTATACCCGACGGGATGCCCTGGCCGAAGGCGAGCTGCCGGTCCCGCTGAAACTGCTGCACATCAACAAGTGCCCTGTG GTGGCACCGCTTTCCGTACTAAGGCCTGCGGATCGGGAGCGGATTGGCGTCGACCTGGCCGCCTGTCAGGCCAAGGCAGATGAACTGGCACGGCAACAGG CGAACTGGCAGGACAAGTTGGCAATGGTTTATGCCGAAGAGTCCTTTGCCGGCAGCGAAGATCCCGAGCAGCAACTTTATGGCGGCTTCCTCGGGGATCG TGATCGTCGACTGTGCGAGCAGGTGCGCAATGCCGATCCGCAGCGACTGGCGCGGGAAGTATGGCCATTCGATGATTCGCGCTTGCCGGAGTTGCTGTTC CGTTACCGGGCGCGAAACTTCCCGGAAACTTTGAGTGCGGAGGAGCAGTCGCGTTGGCAGGAGTTCTGTCGGAATCGGCTTATGCATCCCAATTACGGAG CACCCAATACCCTGGCGGCATTCACCGAAGCGGTGCTGGAGTTGCGTGCAACTGCGTCAACCGATCAGTTGGCGATTCTTGATGCCTGGCAAGCCCATGC CGAAGTAATGCGTCAGCGTTATTCGCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCTGTTCGAACAGGCAATAAAAAACGCCAGCATCCGCTGGCGTTTTTGTTGAAACCGACTGAATCAGCCCAGCAGGGTGGCCCAGCTTTCAACGGTTTC GGCGCCCCACTTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCACCTTTGGTTTCGATGACTTCGCCGGTGTTCGGGTTCTTGTACTGCTTGACCTTG CGGGCACGCTTGGTGCCGGTGGCCGGCTTGGCTGCGCGCGGTTGCTTGGCGGCTTTGGCCTCGGGGTCGAGCAGGGCAATGATATCGCGCAGGGACTTCT GGTATTCGCCCATCAGGGTGCGGAGTTTGCCTTCGAATTCCAGTTCTTTCTGCAGCTTGTCGTCCTGGGACAGGTTCTTCAGGCGCTCCTGGAGTTCTTT GATGGCTTCTTCAGTGGCGCGGTATTCATTGATCAGCGACATGTCGGCGTCCCTTGGTGAATTAGGGGTGAATGATGTGGAGGGATAATAGTCAGGACAC
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| Amino Acid Sequence |
>exonuclease I
MTPSIFWYDYETTGINPRCDRAIQVAGIRTDEALNEVGEPVNLYCRVSDDILPHPAACLVTGILPSTLQGKGLDEAAFIYRVHAELSRPGTCGAGYNTLR FDDEVTRYSFYRNFIDPYAREWQGGNSRWDLIDTLRTAYALRPEGLQWPTEEGRVTLRLERLTAANGIDHGQAHDALSDVRATIGMARRVREAQPKLYDY LFQLRSKHKVMEQIRLMQPLVHVSGRYSAERHFLAVVLPLAWHPRNRNALIVCDLQVEVSPLLDLDAETLRARLYTRRDALAEGELPVPLKLLHINKCPV VAPLSVLRPADRERIGVDLAACQAKADELARQQANWQDKLAMVYAEESFAGSEDPEQQLYGGFLGDRDRRLCEQVRNADPQRLAREVWPFDDSRLPELLF RYRARNFPETLSAEEQSRWQEFCRNRLMHPNYGAPNTLAAFTEAVLELRATASTDQLAILDAWQAHAEVMRQRYSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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