Pseudomonas sp. FeS53a, SZ55_RS11225

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 134 161 -
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 128 486 3.3E-123
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 188 333 1.1E-10
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 155 339 1.3E-63
Pfam PF08448 PAS fold IPR013656 PAS fold-4 39 126 2.5E-7
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 450 467 5.9E-9
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 443 483 1.0E-12
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 169 335 2.6E-66
CDD cd00009 AAA - - 177 331 1.93133E-24
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 161 339 4.8E-73
MobiDBLite mobidb-lite consensus disorder prediction - - 418 440 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 168 402 1.24E-68
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 382 486 1.86E-14
MobiDBLite mobidb-lite consensus disorder prediction - - 420 434 -
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 467 486 5.9E-9
Gene3D G3DSA:1.10.8.60 - - - 340 415 1.8E-22
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 32 125 2.09E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 31 128 3.9E-9
Gene3D G3DSA:1.10.10.60 - - - 425 486 1.3E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.