Pseudomonas sp. FeS53a, SZ55_RS23980

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. FeS53a scaffold28.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGAGGAAGTGCTGGTGATCAACGTGGTCGCCCGCGACGAAGGCGGCTTCAAGGGGCCCGCCCTGCTGCAGAACATCCTCGAGAGCGGCCTGCGTTTCGGC GAGATGGACATCTTCCATCGCCACGAGAGCATGGCCGGCAATGGCGAGGTGCTGTTCTCCATGGCCAACGGCGTCAAGCCCGGCACCTTCGATCTGGACG ATATCGACCTGTTCAGCACCCGTGCGGTGAGCTTCTTCCTCGGTCTGCCTGGCCCGCGTCACCCGAAGCAGGCCTTCGACGTGATGGTGGCCGCAGCCCG CAAGCTCTCCCAGGAACTGAACGGCGAGTTGAAGGACGACCAGCGCAGCGTGCTGACCGCCCAGACCATCGAGCATTACCGCCAGCGCATCGTCGAGTTC GAGCGTCGCAGCCTGACCCAGAAGCGCTGAACCGGAAGATCCACCGAAACAGAGCAGCCCAGGCTGCTCTTTTCGTTTGCACGGAAAAGAGCCCCGCATC
DNA Sequence for Gene
>SZ55_RS23980
ATGAACGACACCTCAGGCAATGCCGCCCAGCGCATCCAGGCACTGCGTGCCGAACTGGATGAGCACAACTACCGCTACTACGTCCTCGACGAGCCCAGCG TGCCCGACGCCGAGTACGACCGCCTGTTCCGCGAGCTGCAGGCCCTGGAAGCCGAGCACCCGGAACTGGTCACCCCCGATTCGCCCACCCAGCGTGTCGG CGGCGAGGCTCTCAGCGCCTTCGGCGAGGTGCGTCACGAAGTGCCCATGCTGAGCCTGGGCAACGCCTTCGAGGAGGAGGACCTGCTGGCCTTCGATCGC AGCGTGCAGAGCGGCCTCGGCCTGTCCGGCGGTGACCTCTTCGGCGGTGGCGCAGCCGTGGAATACAGCTGTGAACCGAAGCTCGACGGCCTGGCCGTCA GCCTGCTGTACCGCAACGGCGTGCTGGAGCGTGGCGCGACGCGTGGCGACGGCACCACCGGCGAGGACATCAGCGCCAACGTGCGCACCATCCGCAACGT ACCGCTCAAGCTGAAGGGCGAGGGCTGGCCGCAGGTGCTGGAGGTACGCGGCGAGGTGTACATGCCCAAGGCCGGCTTCGAGGAGCTCAACGCCCGCCAG ACCGAGAGCGGCGGCAAGACCTTCGCCAACCCGCGCAACGCCGCCGCCGGCAGCCTGCGCCAGCTGGACCCGAAGATCACCGCCAGCCGTCCGCTGGAGT TCTGCTGCTACGGCATCGGCCAGGTCAGCGCCGAACTGGCCCCCACCCAGGTGGGCATGCTGGAGCGCCTCAAGGGCTGGGGCATTCCCATCAGCCGCGA GCTGCGCCTGGCCAAGGGCGTCGAGGCCTGCCTGGACTACTACCGCGACATCGGCCAGCGGCGCATGGCGCTGCCTTACGACATCGACGGCGTGGTGTTC AAGGTCAACACCCTGGAGGACCAGCAGCAACTGGGCTTCCGCGCCCGCACCCCGCACTGGGCCATCGCCCACAAGTTCCCCGCCCAGGAGGAGCTGACCG AGCTGCTGGACGTCGAGTTCCAGGTCGGCCGTACCGGTGCGGTGACGCCCGTGGCGCGCCTCAAGCCGGTCAAGGTGGCGGGCGTCACCGTCGCCAATGC CACCCTGCACAACATGGACGAAGTCGCCCGCCTGGGCCTGATGATCGGCGACACCGTCATCATCCGCCGCGCCGGTGACGTGATCCCGCAGGTCATGCAA GTGGTAGCAGAGCGCCGCCCTGCGGATGCCCGTCCGGTGCACGTGCCGGAGCAATGCCCAGTGTGCGGTTCCGCCGTCGAGCGCACCCAACTGGTCAAGC GCGCCAAGGGCAAGGCCACCACCAGCGAAGGCTCGGTGTACCGCTGCGTCGGCCGCCTGGCCTGCGGCGCCCAGCTCAAGCAGGCGATCATCCACTTCGC CTCCCGCCGCGCCATGGACATTGACGGCCTGGGCGACAAGATCGTCGAGCAGCTGGTGGACACCGGCCTGGTGGCGTCGCCCGCCGACCTCTACACCCTC ACCTACGAGCAGGTGGTGGAGCTGGAGGGCTTCGCCGACCTGTCGACCCGCAACCTGCTGGCGGCGATCCAGGACAGCGCCAAGCCGACCCTGGCGCGCT TCATCTTCGCCCTCGGCATTCCCGATGTCGGTGAAGAGACCGCCAAGCTGCTGGCTCGCGCCCTCGGCTCGCTGAAGCGCCTGGAACAGGCCCTGCCGGA AGTGCTGACCTACCTGCCCGACGTGGGGCTGGAAGTGGCGTCGGAGATCCACAACTTCTTCGGCGACGACCACAACCGCCAGGTGATTGCCGACCTGCTG GCCCGCGGCGTCGTCCTGCAGGACGAAGGCGAGGTCAGTGCCGAATTCACCGCCTGCGCCTCCCTGGGTGGCTTCCTCGACAAGCTGAACATCCCCGGTA TCGCCACCACCGGCGCTGAGAAGCTGGCGGCCCGCTTCGGCAGCCTGCAGGGCGTGATCCAGGCCGATTGGCTGGACCTGCGCCAGGTGGAACGCCTCAA CGAAAAGGCCGCCCGCTCCCTGCGCGACTTCTTCGACGAGCCGGCCAACCGCGAGCACGCCCTGCGCATCGAGGCGCAACTGCTGGAGTTCGGCATGCAC TGGTCGTGCGAACGCAAGGTGGTGGAAGGGTTGCCCCTGGCCGGGCAGACCTGGGTGCTGACCGGCACGCTGGAGGCCATGAGCCGCGACCAGGCCAAGG ACAAGCTGGAAGCCCTGGGTGCCAAGGTCGCGGGCTCAGTGTCGGCGCGTACCCACTGCGTGGTCGCCGGGCCGGGTGCTGGCTCCAAGCTGGCCAAGGC CACCGAACTGGGATTGCGGGTGCTGGACGAGGAGCAATTCCTCGCTGAACTGAAGACCCTCGGCGCCGCGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGGCGCCACACATGAAAAGGCCGGGCTCGATGCCCGGCCTTTTCGTATCAGCCGTTGATGGCGTCGGTCAGGGCCTTGGCCGGCACCAACTTGACCACCT TCTTCGCGGCGATCTCGATGCTCTTGCCGGTCTGCGGGTTGCGGCCGGTGCGCGCCGGGCGTTCGCTGACCTTGAGCTTGCCGATGCCCGGCAGGGTGAT CTCATCGCCGTTCTCCAGCGAGTCGCTGACGATCTCGCTCAGTTGCTCCAGCACGGCGCGCACGGTTGCGCGGGTGGCGTCTGTGGCGTCGGCGATGTCG GCGATGAGTTGGTCTTTGGTGAGTGCCATGGGGGTGCTCCGATGAAGATGAAGGCGCCCGGCTCTAAGCGGGGCGGGGGCACGCTAGCACAGATCGGTTT CCCGCGCGTTGCAGGGAGTCGGACTACGCTTGTGCGAATCGCCGCGCCCTGGGGAGAGTCGTCATGCTGCAAGCCTTCGCCGACCTGAGTTTCCGCTGGA
Amino Acid Sequence
>NAD-dependent DNA ligase LigA
MNDTSGNAAQRIQALRAELDEHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPDSPTQRVGGEALSAFGEVRHEVPMLSLGNAFEEEDLLAFDR SVQSGLGLSGGDLFGGGAAVEYSCEPKLDGLAVSLLYRNGVLERGATRGDGTTGEDISANVRTIRNVPLKLKGEGWPQVLEVRGEVYMPKAGFEELNARQ TESGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGIGQVSAELAPTQVGMLERLKGWGIPISRELRLAKGVEACLDYYRDIGQRRMALPYDIDGVVF KVNTLEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQ VVAERRPADARPVHVPEQCPVCGSAVERTQLVKRAKGKATTSEGSVYRCVGRLACGAQLKQAIIHFASRRAMDIDGLGDKIVEQLVDTGLVASPADLYTL TYEQVVELEGFADLSTRNLLAAIQDSAKPTLARFIFALGIPDVGEETAKLLARALGSLKRLEQALPEVLTYLPDVGLEVASEIHNFFGDDHNRQVIADLL ARGVVLQDEGEVSAEFTACASLGGFLDKLNIPGIATTGAEKLAARFGSLQGVIQADWLDLRQVERLNEKAARSLRDFFDEPANREHALRIEAQLLEFGMH WSCERKVVEGLPLAGQTWVLTGTLEAMSRDQAKDKLEALGAKVAGSVSARTHCVVAGPGAGSKLAKATELGLRVLDEEQFLAELKTLGAA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site