Pseudomonas sp. FeS53a, SZ55_RS22510

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. FeS53a scaffold24.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCAGGGCGTCCGCGTGGTCGCACTGCCGCGTCGGCACGACCCACTCAACCTGTCCTTCTCCATCGAAGGCACGCTGAACATCGACGGCACCCGGCGGCAG GTCAGCTTCGCCGCCCACCTCGACGGCAGCGGCAAGGTCAAGGTCCAGTAAGGAGATACCCCCCATGTCCGGCAAACCCGCCGCACGCCTGTCCGACCCG ACGGCATGCCCCATCCCGTTCCACCTGATCAACCCGATCGCCGTCGGGTCACCCGACGTGCTGTTCGACGGCCTGCCCGCCGCACGCCAGGGCGACCCGT CGGCCTGCGGCGGGGCCATGGCGGCCAACCTTTCCGCCACCGTACTGATCAATGGGCGTCCCGCTGCCACCGTGGGAAGCATTGGCAGTCACGGCAACGT CGTCCTCAGCGGTTCGGGAACCGTACTGATCGGCTGACGCATACAGCGCCCTGGCCCTTTCGCCAGTCTTCGCCCAGGAACACCGGGAACTCAGTCCTCC
DNA Sequence for Gene
>SZ55_RS22510
ATGTCCTTCAACCACTACTACCAAAGCGAGCTGACCGCCCTGCGCCAGCTCGGGCGCCGCTTCGCCGAGCGCAGCCCGGCCTTGGCGCCATTTCTCGCCC AGGCGGGGCGGGATCCGGACGTGGAGCGCCTGCTGGAGGGCTTCGCGTTCCTGACTGGCCGGCTGCGGCAGAAGCTCGACGACGAACTGCCCGAGCTGAC CCATTCGCTGATGCACCTGCTGTGGCCGAACTACATGCGCCCCCTGCCGGCGTTCAGCATCCTGCAGTTCGATCCGCATGACGGCGCGGGTGAGGCCCTG GTGGTGCCCCGTGAGACCTGCGTGGAAAGCAACCCAGTGGATGGCGTGCGCTGCCGCTTCAAGACCTGCTTCCCCACCGAGATCCTGCCCTTGCGGGCCG ATGGCCTTAGCTACTCCGTCACCGGGGATGGTGCCTTGCTCAGCCTGCGCCTGGCCCTGATCGGCGACGGCCACCTGGGCGACGTTCCCTTCGACCGGCT GCGCCTGCACCTGGCGGGCGAGCGCTACATCAGCCAGACGCTCTACCTTGGGCTGGTGCACGACCTCGACAACGTCGAGCTGGTGCCGCTGGACGCAAAC CACGTCGCCCTGCAGGACGAACGCGGCCAGCCCATCGGCCTGCGCCTGCCATCCACCAGCATTCGCCCCGTGGGCTTCGCCGAGGAAGAGGCGCTCATCC CCTACCCGCTGAACACCTTCCGCGGCTACCGCTACCTGCAGGAATACTTCGCCTTCCAGGACAAGTTCCTCTTCGTCGACCTCACCGGCCTGGCCTGCCT CGGCGGCCTGCCCAAGGAGCAGCTGGAACAGGCCAGGGGCCTGGAGCTGCGTTTCGACATCCGTCGCAGCGGCATCCAGCGCCTGCGCCCGACCCTGGAC AACCTGAAGCTCTACTGCACCCCGGTAGCCAACCTGTTCCGCCACGACGCCCTGCCCATCCGCCTCGACGGCAAGCAGGACGAATACCTGATCCTCCCGG CCGAGTACGACCCGCAGCACTGCGGCGTGTTCTCCGTCGACACCGTCAGCGGCTGGCTGCCCGGCGGGGTCGGTCATCGCGACTACGTGCAGTTCGAATC CTTCGAGCATGACGCCAGCTTCGACGTGCCGATGCCCCGGCCGCACTACAGCGTGCGCCAGCGCAACTCCTTGCTGCACGACGGGCTGGACACCTACCTC AGCTTCGGTGCGCGCAGCAGCCAGGAACAGGAAACCCTCTCCGTGGAGTTGACCTGCACCAACCAGAACCTGCCGCGCCGGCTGCGCCTGGGCGACATCT GCCGTCCCGGCGAGGGAGCACCGGACTTCCTCACCTTCCGCAACATCACCGCCGTGACCGCCAGCTACGCACCGCCGATCAACCGCGAGTTCCTCTGGAA GCTGATCAGCAACATGTCGCTGAACTACCTCTCGCTCGCCAACGTCGGCGCGCTGAAGGTGATCCTCGAAACCTACGACCTGCCGCGCTACTACGACCAG CACGCGGAAAAGGTCAGCAAGCGCCTGCTCAACGGCCTCAAGTCGATCCGCCACCAGCATGTGGACAGGCTCCACCGCGGCCTGCCGGTCCGAGGCCTGC GCACCGAGATGAGCATCGACCCCGAAGGCTACATCTGCGACGGCGACCTCTTCGTCTTCGCCTCGGTGCTCAACGAATTCTTCGCACTCTACGCAAGCCT CAACTCGTACCACGAGCTACGGGTCCGCAGCACACAGGGAGAGGTGTACCAATGGACACCACGCATGGGCCAGCAGCCCTTGCTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCGCCTGAGCCAGGGCATCCGGGAATACGCGCTGTTCCAGGCCGTACTCCTGGCGATGGAGCACCTGCACCAGGCGGACGGCACGGACGAGGCAATCGA CGAGGAACGCCTCTACGAGCGCATCGAATTCCAGGCCAACCCGAGCCTGGGCTTCCCCGGCACCGATATCCACAGCCTGACCTTCTTTGAAGAAGGGGGC GAGACGCGCGCGCGCATCTGCCTGAACCTCGTCCGCCTTTCCGGCTCGGGCTCGCCGCTGCCCGCCTTTTATGCCGAGCAGGTGCTGGGCGAAGGGGACG ACGACAACCCCACCCGGGATTTCCTCGACCTGTTCCACCACCGGCTGCAGCGGCTGCTGCTGCCGATCTGGCGCAAGTACCGCTATCGGTCGAGCTTCCA GAGTGGTGCCCGGGACGCCTTCTCCGAACGGCTGTTCGCCCTGATCGGCCTGGGCAGCGAGGAGCTGCGCAGCGCCGAGGAACTGAACTGGAAGCGCCTG
Amino Acid Sequence
>type VI secretion protein
MSFNHYYQSELTALRQLGRRFAERSPALAPFLAQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPNYMRPLPAFSILQFDPHDGAGEAL VVPRETCVESNPVDGVRCRFKTCFPTEILPLRADGLSYSVTGDGALLSLRLALIGDGHLGDVPFDRLRLHLAGERYISQTLYLGLVHDLDNVELVPLDAN HVALQDERGQPIGLRLPSTSIRPVGFAEEEALIPYPLNTFRGYRYLQEYFAFQDKFLFVDLTGLACLGGLPKEQLEQARGLELRFDIRRSGIQRLRPTLD NLKLYCTPVANLFRHDALPIRLDGKQDEYLILPAEYDPQHCGVFSVDTVSGWLPGGVGHRDYVQFESFEHDASFDVPMPRPHYSVRQRNSLLHDGLDTYL SFGARSSQEQETLSVELTCTNQNLPRRLRLGDICRPGEGAPDFLTFRNITAVTASYAPPINREFLWKLISNMSLNYLSLANVGALKVILETYDLPRYYDQ HAEKVSKRLLNGLKSIRHQHVDRLHRGLPVRGLRTEMSIDPEGYICDGDLFVFASVLNEFFALYASLNSYHELRVRSTQGEVYQWTPRMGQQPLL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site