Pseudomonas sp. FeS53a, SZ55_RS22490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold24.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCTGTGCCAGTTCCCCATCGAACTGCCGCCGCTGCGCCAGCGGGGCGAAGACATCCCCCACCTCGCCCGCCACTTCGCCAACCAGGCCTGCCGTTTTC TCCAGCGCTCGCCCTGCCTGTGGTCGGAGGAGGCGCTGGAGCGACTGGCCCGGCACCCCTTCCCAGGCAACGTGCGCGAGCTGAAGGCCCTGGTGGAGCG CGCCGTGCTGCTCTGCGACGGCGAGCTGCTGCCGTCCCACTTCAGCCTGCGTGGCACGCCCCTGCCCAGCGGGCAGCCCCTGAGCCTGCGTGAGCGCCTC GACCACTACGAGCGCGGCCAACTCATCGACGCCCTGCGCCGCCATGACGGCAACCGTGCACTGGCAGCCCGCGAGCTGGGCCTGCCCCGCCGCACCCTGC TGTACCGCATGGACCGCCTCGGCATCGGCACGGCGGATCTCTGAAGCGCCCGGCCATGCCCCTACCCCACTCACCCCCGACTTCCAAAGGAGGATGCCCG
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| DNA Sequence for Gene |
>SZ55_RS22490
ATGTTCCCCCGCACCCTACGTGCCCTCGCAGGCCTGGCGCTGTGCATCGCCCTGGCCGGCTGCAGCGGCAACTACAAGTTCGACGACGGCGACTACCGCC CGCTCGGCACCCCGCAGATCCTCAACCGCGGCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCCAGGGAGCGACCCGCCATGGAACTGGTTCTAGAAATCGTTGGTGCCCAGCAGTTCGTCCCGACCACCTCCGGTCGCCGACGCTTCCTCCGCGCAGG CGGCAGCCTCGGCCGTGCCGAAGATTGCGACTGGGTGATCCCCGACCAGCAGCGCCACCTGTCCAACCGCCACGCCCGCGTGAGCTACCGCGACGGGCGC TACTTCCTTACCGACACCAGCAGCAACGGCATCCGTCTCAAGGACTCGGGCGCTCACCTGCCCAAAGGCGAGGCCCACCCCATCGAGAACGGCACGGTGT TCTGCATGGGCAGCTTCGACATCCAGGCCCGCCTGGTGGCCACCCAGGACATACCGCTGGAGGACATCGGGCGGCCGACCCCGGCCGGCAGCATCATCCC CGATGACTCCTTCCTCGAGCTCGACCCCCTGGCGAGCCTCGACCAGGAAGAAGAAGCCGACCGGGACGACCTCCACGGGCTGCTCCAGGCCCCTGACGAA
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| Amino Acid Sequence |
>type VI secretion protein
MFPRTLRALAGLALCIALAGCSGNYKFDDGDYRPLGTPQILNRGN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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