Pseudomonas sp. FeS53a, SZ55_RS02305
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold22.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGATCACCCACGGCGCGCTTCTCGCCCGTCTGCTGGCCTGATCGACATGACCACCGGGAAGCGCTGAACATTCAGCGCTTCCCTTAATGCTGGTGATT TTTTAGACTATCCAGTCCGCTCCGCCCGTTCCGGGCAAAGCCATCGCCACCCCACTCTGTGCTACGAGGAACACCATGGCCCGCGTTACCGTTGAAGACT GCCTGGAAAACGTCGATAACCGCTTCGAGCTGGTCATGCTCGCGACCAAGCGTTCCCGTCAGCTGGCCACCGGCGGCAAGGAGCCGAAGGTAGCCTGGGA AAACGACAAGCCCACCGTCGTCGCCCTGCGTGAGATCGCCGCCGGCCTGGTTGATTACGAAGTCATCGCCCAGGAAGACATCGTGGAAGAAGAGCCGCTG TTCGCTGCCTTCGAGGACGAGTCCAACGAGGCGCTCTGATTCCCATGCCCGGTCGACGTCGCACGGCGCAGGGAGGCCATAGCCGGAAAGGAGAACTGCC
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| DNA Sequence for Gene |
>SZ55_RS02305
TTGCCTGGCATAGAAACCTTCGCCGAACGGCTCTCGACCTATCTCGGCCCGGACCAGGTCAACCTGGTCCGCCGGGCGTACTACTACGCCGAACAGGCCC ATGACGGGCAGCGTCGCCGCAGCGGCGAGGCCTACGTCACCCACCCCCTGGCCGTCGCTAACATCCTCGCCGACATGCACATGGACCATCAGAGCCTGAT GGCCGCCATGCTGCACGACGTGATCGAGGACACCGGCATCGCCAAGGAGGCGCTCACCGCCCAGTTCGGCGACACCGTGGCCGAGCTGGTGGACGGGGTC AGCAAGCTGACCCAGATGAACTTCGAGTCCAAGGCCGAGGCCCAGGCCGAGAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGACATCCGCGTGATCC TGGTCAAGTTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTCTCCGGCGAAAAGCGCCGGCGTATCGCCAAGGAAACCCTGGAAATCTACGC CCCCATCGCCAACCGGCTGGGCATGCACAGCATGCGCGTGGAATTCGAGGACCTCGGCTTCAAGGCCATGCACCCCATGCGCTCCGAGCGCATCCGTGCC GCCGTCCGCCGGGCCCGGGGCAACCGCAAGGAAATCGTCGCCAAGATCGAGGAATCCCTCACCCATTGCCTCGCCCGCGAAGGCATGGAAGGCGAGGTGA TCGGCCGCGAGAAGCACCTCTACAGCATCTACAAGAAGATGCGCGGCAAGCGCCGGGCGTTCAACGAGATCATGGACGTCTACGCCTTCCGCATCATCGT CGACAAGGTGGATACCTGCTACCGCGTGCTCGGCGCCGTGCACAACCTGTACAAACCGCTGCCCGGCCGCTTCAAGGACTACATCGCCATTCCCAAGGCC AATGGCTACCAGTCCCTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAGATCCAGATCCGTACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCACTGGCTGTACAAGTCCGCCGAGGACGACCAGCCCAAGGGCACCCACGCCCGCGCGCGCCAGTGGGTCAAGGGCGTGCTGGAACTGCA GCAACGTGCCGGCAACTCCCTCGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCCGACGAGGTCTACGTCTTCACGCCCAAGGGCCGCATCATGGAG CTGCCCAAGGGCTCCACCGCGGTCGACTTCGCCTACGCGGTCCACACCGACGTCGGCAACACCTGCATCGCCTGCCGCATCAACCGTCGCCTGGCGCCCC TGTCCGAGCCGCTGCAGAGCGGCGAGACGGTGGAAATCGTCACCGCCCCCGGCGCACGGCCCAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC CCGCACCCACATCCGCCACGCCCTCAAGCTGCAGCGCCGCTCCGAGTCCATCAACCTCGGTGAACGCCTGCTGAACAAGGTGCTGGCCGGCTTCGAAAGC AGCCTCGACAAGATCACCCCCGAGCGCATCCAGGCCGTCCTCGGCGAATACCGCCTGGAAGTACTGGAAGACCTGCTGGAAGACATCGGCCTCGGCAACC GCATGGCCTACGTCGTGGCCCGCCGCCTGCTGGCCAGCGATGGCGAACAGCTGCCCAGCCCCGAAGGCCCGCTGGCGATCCGTGGCACCGAAGGCCTGGT GCTCAGCTACGCCAAGTGCTGCACGCCGATCCCCGGCGACCCCATCGTCGGCCACCTCTCCGCCGGCCGCGGCATGGTGGTGCACCTGGAAAGCTGCAAG AACATCGGCGACATCCGCCACAACCCGGAGAAGTGCGTGCAACTCTCCTGGGCCAAGGACGTCACCGGCGAATTCAACGTCGAGCTGCGCGTCGAGCTGG AACATCAACGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCCGCCGACGGCAACATCGAGAAGATCGGCATGGACGAGCGCGATGGCCGCATCAG TGTCGTCCAGCTGGTGATCAGCGTGCACGACCGCGTGCACCTGGCCCGGGTCATCAAGAAACTGCGCGCCCTCAAGGGGGTGATCCGCATCACCCGGGTG CGCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCCCGCTGAACCCACGGAGGCGAGGCCGCCCGGGCACACCCGCCCATGGCCAGGCCCGTCTCCAACCGCGCCCATCCGGGTACAGCCCGGGGTGCTTT CACCTGTACAAGGAGTTTCCATGAGCAAGACCGTGATCAACAGCGACAAGGCTCCCGCCGCCATCGGCACCTACTCCCAGGCGATCAAGGCCGGCAACAC CGTCTACATGTCCGGGCAGATCCCCCTCGATCCCAAGACCATGGAGCTGGTGGAAGGCTTCGAAGCCCAGACCGTCCAGGTGTTCGAGAACCTGAAGGCC GTCGCCGAAGCCGCCGGTGGCTCCTTCAAGGACATCGTCAAACTCAACATCTTCCTCACCGACCTGTCCCACTTCGCCAAGGTCAACGAAGTGATGGGCC GCTACTTCGAGCAGCCCTATCCGGCCCGCGCCGCCATCGGCGTGGCCGCGCTGCCCCGTGGCTCTCAGGTCGAGATGGACGCCATCCTGGTCCTCGAGTA
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPGIETFAERLSTYLGPDQVNLVRRAYYYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALTAQFGDTVAELVDGV SKLTQMNFESKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSMRVEFEDLGFKAMHPMRSERIRA AVRRARGNRKEIVAKIEESLTHCLAREGMEGEVIGREKHLYSIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSAEDDQPKGTHARARQWVKGVLELQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNTCIACRINRRLAPLSEPLQSGETVEIVTAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKVLAGFES SLDKITPERIQAVLGEYRLEVLEDLLEDIGLGNRMAYVVARRLLASDGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGRGMVVHLESCK NIGDIRHNPEKCVQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKIGMDERDGRISVVQLVISVHDRVHLARVIKKLRALKGVIRITRV RA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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