Pseudomonas sp. FeS53a, SZ55_RS04440
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold16.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGAAGAACGCCGCCGTCGCCAAGGAAGAGACCTTCGGCCCGCTGGCCCCGCTGTTCCGCTTCAAGGACGAGGCCGAAGTCATCGCCATGTCCAACGAC ACCGAGTTCGGCCTGGCCTCCTACTTCTACGCCCGTGACCTGGGCCGCGTGTTCCGCGTGGCCGAGGCGCTGGAATACGGCATGGTGGGCATCAACACCG GCCTGATCTCCAACGAAGTGGCGCCGTTCGGCGGCATCAAGGCCTCCGGCCTGGGTCGCGAAGGCTCCAAGTACGGCATCGAGGACTACCTGGAAATCAA GTACCTCTGCCTCGGCGGGATCTGAACCTGATGCAAAGACGGGGCAAGGCGCGAAAGAGCGCGCGGCGCCCCAGCTCCACAACCTGAACCGACGAACCTC CGGCGGGCCTGCGCAGTCGATCATCGAATGCTGCGCAAGCGCCCACCGGGGGTATTCATCCTTGAGACTGCGCCGCCCGATGAGCGGCCGTGAGGAAGAC
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| DNA Sequence for Gene |
>SZ55_RS04440
ATGAGCAAGAACGAATCCCTGCTGAAACGCCGTGCCGCCGCTGTAGCCCGTGGTGTTGGCCAGATCCACCCGGTCGTCGCCGAGCGCGCCGAGAACGCCA CCGTCTGGGACGTGGATGGCCGCGAGTACATCGACTTCGCCGGCGGCATCGCCGTACTGAACACCGGCCACCTGCACCCGAAGGTGATCGCCGCTGTCCA GGAGCAGCTGACCAAGCTGTCCCACACCTGCTTCCAGGTACTGGCCTACGAGCCCTACATCGAGCTCTGCGAAGAGATCGCCAAGCGCGTACCGGGTGAC TTCGCCAAGAAGACCCTGCTGGTCACCTCCGGCTCCGAAGCCGTCGAAAACGCCGTCAAGATCGCCCGCGCCGCCACCGGCCGTGCCGGCGTCATCGCCT TCACCGGCGCCTACCACGGCCGCACCATGATGACCCTGTCCCTGACCGGCAAGGTGGTTCCGTACTCCGCCGGCATGGGCCTGATGCCCGGCGGCGTGTT CCGTGCCCTGGCCCCGTGCGAACTGCACGGCGTGAGCGAAGACGACTCCATCGCCAGCATCGAGCGCATCTTCAAGAACGACGCCCAGCCCCAGGACATC GCCGCGATCATCATCGAGCCGGTCCAGGGCGAGGGTGGCTTCTACGTCAACTCCAAGGCCTTCATGCAGCGCCTGCGCGCCCTGTGCGACCAGCACGGCA TCCTGCTGATCGCTGACGAAGTGCAGACCGGCGCTGGCCGTACCGGCACCTTCTTCGCCACCGAGCAACTGGGCATCACCCCGGACCTGACCACCTTCGC CAAATCCGTTGGCGGCGGCTTCCCCATTTCCGGCGTGTGCGGCAAGGCCGAGATCATGGACGCCATCGCCCCCGGTGGCCTGGGCGGCACCTACGCCGGC AGCCCGATCGCCTGCGCCGCGGCCCTGGCCGTGCTGAAGGTGTTCGACGAAGAGAAACTGCTGGAGCGCAGCCAGGCTGTTGGCGAGCGCCTCAAGGCCG GCCTGCGTGACATCGCTGCCAAGCACAAGGTCATCGGCGACGTCCGCGGCCTGGGCTCCATGATCGCCATCGAACTGTTCGAAGGCGGCGACGTGCACAA GCCCGCTGCCGAGCTGGTTGGCAAGATCGTGGCCCGCGCCCGTGAGAAAGGCCTGATCCTGCTGTCCTGCGGCACCTACTACAACGTGATCCGCTTCCTG ATGCCGGTGACCATTCCCGATGCCCAGCTCGACAAGGGCCTGGCCATCGTCGCCGAGTGCTTCGACGAACTCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTCACCAGCCAGGCGTACTTGAGACCCGCTTCGGCGGGTCTTTTTTTGCCTCGGATCAAGCCGATTTCAACCAGTCGGTCAATATGTCATCAGGCCAC TACTCAGCCCTTCATCGGCGCTTTAGACTTGTCGCCTTCTTTTTTGCCAACTCCGTCGCACTCACTCACGGCGCTCCCGCAGTAGCCCGAGGTATCCATG ACCGCCCACGCCAAGGTTCCGGAAGTCCTGATTGCCGAGGCAGACCCGTGGACGGCCGACCTGCTCGCCCAGCTGGTGCTGGATATCCGCGCCGACGCCA GCCTCGTCCGTGTCGCCGACGCGCCCACCGCTCTCGCGCGCTGCAAGCGCCGCCTGCCCGACCTGGTGATCGCCGACGGTGAACTGCAGGGCGGTGGTGG CCTGGAGCTGCTGCGCCAGCTGCGTCGCCACCCGCGCACCCCCATGCTGCCGTTCGTGCTCATCAGCGCCCGGGTGGATGCCGGTAGCGTGCGTGCCGTG
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| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSKNESLLKRRAAAVARGVGQIHPVVAERAENATVWDVDGREYIDFAGGIAVLNTGHLHPKVIAAVQEQLTKLSHTCFQVLAYEPYIELCEEIAKRVPGD FAKKTLLVTSGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLSLTGKVVPYSAGMGLMPGGVFRALAPCELHGVSEDDSIASIERIFKNDAQPQDI AAIIIEPVQGEGGFYVNSKAFMQRLRALCDQHGILLIADEVQTGAGRTGTFFATEQLGITPDLTTFAKSVGGGFPISGVCGKAEIMDAIAPGGLGGTYAG SPIACAAALAVLKVFDEEKLLERSQAVGERLKAGLRDIAAKHKVIGDVRGLGSMIAIELFEGGDVHKPAAELVGKIVARAREKGLILLSCGTYYNVIRFL MPVTIPDAQLDKGLAIVAECFDELA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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