Pseudomonas sp. FeS53a, SZ55_RS19080

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. FeS53a scaffold15.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGAAGCCGCCCTGGGCACAGCGCTGCAGACCGCCGTGAAGCGCGCCGACGAGCAGGCTTTTGCGCTGGCCAATGGCCACAACCTGATGTTCTGCGAAGA CGCCGCGCGGCGCCTGGCCGAGCCCCTGCGGGCGCTGCCGGACCTGGCTGCATTCAAGGTGCGTGTGGAGCACGAGGAAAGCCTGCACGCCCACGACGCC GTGGCGGAAATCCACTGGCTCTGGACCTSAGCCCCTTTCCCCGCCCGGCCCCTGGCCTGGCGGCACCCTCCAACTGCCCTTCCCGCTCCCAGGCCGTGGC ATTGCGCCCGGCCTGAGGCCCCCGGCTGCCCCTGTCCCCCTGGCGGGCGGATTACGGAATTGTAATCAGCGCCTCATCTCCGGGTTATCCGGCGCTTGCC ACGATAGCCCCGCCGCGCGCCGCCCGCGTGAGCGTCGGCGTGTTCGATAACAACAACGACATGGCCTCCACGACCTGCCATACACGAACAGGAGCATCCG
DNA Sequence for Gene
>SZ55_RS19080
ATGATCCAATCCGCACGGGCCCCCCTGGCCCTCTTCGTCGCCCTCGCCGCCAGCACACCCCTGCAGGCCGCCGAGCAGAAGCCCGAAGGCTTCATCGAAG GCAGCAGCCTCACCGTCCTCAACCGCAACTTCTACATGAACCGGGACTTCCGCCACGGCCAGTCCAGCCCCACCGACAACGGCTACACCGAAGCCTGGGC CCATGGCGTGATCGCCACCTTCCAGTCCGGCTTCACCGAAGGCACGGTGGGGGTCGGCATCGACGCCTTCGCCATGCTCGGCCTGAAGCTGGACACCGGC GACGGCCGCTACGGCCCGGGCGGCAGCGTCAACCTGCTGCCGGTGAACAGCCGCGGCGAGGCCGAGGACAGCTACTCCAAGACCGGCGGCGCCCTGAAGG TGCGGGCCTTCGACACCGTGCTCAAGGCCGGCGACGTGTTCCCCACCACCCCGGTGGTGCATTACGGCGACGCCCGCCTGCTGCCGGAGAGCTTCCGTGG CGTGACCCTGGAAAACACCAGCCTGGAGGGCCTGAAGGTCCAGGCCGGGCGCCTGCACGCCATGAGCCAGCCCCAGGAAAGCGGCATGCGCGGCAACTTC GCCACCTTCTATGCCGGCCGCGTGGACGCCCCCTGGGTGGCCTACCTGGGCGGTGACTACCAGGTGAACGAGTACCTGGGCCTGAGCCTCTACAGCAGCC GCCTCAAGGACGCCTGGAACCAGCACTACGCCGGCCTCCAGCTGGAGTACCCGCTGGGCGAGGACCTGGCCCTGATCGGCGGCCTCAACCTGTACAAGGC CACCGACGAGGGGCGCCGCCTGTTGGGCACGTTCGACAACACCATCTACAGCGGCAAGGTCGGCGTGCGCTACGGCGCCCACACCCTGGCGCTGTCGCAC CAGCGCAACACCGGTGACGACGACTTCGACTACCTGCGCCAGTCCGACTCGATCTTCCTCGACAACTCCATCCAGTACAGCGACTTCAACTCGCCGAAGG AGCGCTCCTGGATGCTCCGCTACGACCTGGACATGGCCGCCTACGGCGTGCCGGGCCTGAGCTTCATGACCCGCTACGCCCGCGGCACCGACGCGGACTA CTCCCACGCCAACAGCACCTACATGCGCCGCGACGGCAACGGCGACCCGCTGGTGGACCAGAAGCGCTGGGAGCGCGACATCGAGGCCCGCTACGTGGTG CAGAGCGGCTCGCTGAAGGACCTGTCCCTGCGCCTGCGCCAGGCCACCACCCGCGCCACCGACTTCGAGTCGGACCTGGACGAGGTGCGCCTGATCGTCG AGTACCCGCTGAACGTGCTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGGGGCGTCCGGGCCGCCCCACGGGGGTCGGCCCGGATATCAAAGATGTAATCCGCGCCTCACCGTCCTGTTAGCTTCCGCTCCTTAGCATGGGCCTCGT GGTTCGACGCCAATCCCGAAAGATGAACGAGGTTACCCCCATGAAAGCCAGTCTTCTCCTGATCGCCCTGCTTGGCCTGAACGCCACCGCCGCCCTCGCC GAAGACGGCTCGGAACGCGCCCAGCAGATGGTCCAGGCCGCCCGCGATGCCCAGCTCGCCCGCCCGGCCGACGACAGCCAGACACTCACCGCCCAGCGCG ACGCCGACAAGGCCGAGGCCAGGGGCGCCGAACGCGCCAACAACTGATTTCCCCAGGCAATACGTCCACCTCCCGCTTCCGCTCCTTTGGATGGGGTGGA CCCTGAGGCGCCCCGGACGGGCGCCTTTTTTTGTGGCCGTCCGGTCGCAAATCCTCTCCCCCTCTCTCCAGCGACCGATTGCCGCGCCACGGCCCGCCGT
Amino Acid Sequence
>porin
MIQSARAPLALFVALAASTPLQAAEQKPEGFIEGSSLTVLNRNFYMNRDFRHGQSSPTDNGYTEAWAHGVIATFQSGFTEGTVGVGIDAFAMLGLKLDTG DGRYGPGGSVNLLPVNSRGEAEDSYSKTGGALKVRAFDTVLKAGDVFPTTPVVHYGDARLLPESFRGVTLENTSLEGLKVQAGRLHAMSQPQESGMRGNF ATFYAGRVDAPWVAYLGGDYQVNEYLGLSLYSSRLKDAWNQHYAGLQLEYPLGEDLALIGGLNLYKATDEGRRLLGTFDNTIYSGKVGVRYGAHTLALSH QRNTGDDDFDYLRQSDSIFLDNSIQYSDFNSPKERSWMLRYDLDMAAYGVPGLSFMTRYARGTDADYSHANSTYMRRDGNGDPLVDQKRWERDIEARYVV QSGSLKDLSLRLRQATTRATDFESDLDEVRLIVEYPLNVL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site