Pseudomonas sp. FeS53a, SZ55_RS12775
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold14.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACAGCCTCGACTGAGCCCCCTCCAACTGACCATCCGGTCGCACACACGACTTTTGTAGTAGTCACAAAAAAACACTACAAAAACGTTTGACGAACAC TTGTTTGAGGCGCATGATGGCCCCGCTCCCGCTAACCAGGGGCCCTGAAACGGGCCTCCGGGCCGTGCTCCAGACCAACGAGCCGACCCGTGTTGTGTAG CCCAAAAGGCAGTGCGACGAGGTTGCGACTGGAACGAGGTTGTCCTGAGGGACGGGGAAGCACCGCGAAACTGGCAGACGAAACTTCACCCCTATTCGTG CGTCAAGGCATCCACGAGCCGAAAGCGCCACGGGTAGCGATCACCGAAGCCGCCTGCACCGTTCGTCTCAACCCCTCCCTCCGAGTTCACACTCGCTCTG GTCACATTCTCAGCGTACTGCGGTGAGCAACCCGCCATGGCCTTCCAGGTCCTTGCACGGGGAAGTTGGTGCTCAACCATACACATTTGAAGGATTGACC
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| DNA Sequence for Gene |
>SZ55_RS12775
ATGTCCGCATATCAGAACGAGATCAAAGCCGTTGCCGCGCTGAAAGAGAAGTACGGCAGCAGCTGGAGCGCGATCAACCCCGAGTACGCAGCTCGCATGC GTGTGCAGAACCGCTTCAAGACCGGTCTGGACATCGCCAAGTACACCGCGGCCATCATGCGCAAGGACATGGCCGAGTACGATGCCGACTCCTCCGTCTA CACCCAGTCCCTGGGCTGCTGGCACGGCTTCATCGGTCAGCAGAAGCTGATCTCCATCAAGAAGCACCTGAAGACCACCAACAAGCGCTACCTCTACCTG TCCGGCTGGATGGTTGCCGCCCTGCGTTCCGACTTCGGTCCGCTGCCCGACCAGTCCATGCACGAGAAGACTGCTGTCGCCGGCCTGATCGAAGAGCTGT ACACCTTCCTGCGCCAGGCTGACGCCCGCGAACTGGACCTGCTGTTCACCGCCCTGGACGCTGCCCGCGCCGCCGGTGACAAGGCCAAGGAAGCCGAAGT ACAGGCCCAGATCGACGGCTACGAAACCCACGTCGTCCCGATCATCGCCGACATCGACGCTGGCTTCGGTAACCCGGAAGCCACCTACCTGCTGGCCAAG AAGATGATCGAAGCCGGTGCATGCTGCATCCAGATCGAGAACCAGGTTTCCGACGAGAAGCAGTGCGGCCACCAGGACGGCAAAGTGACCGTTCCCCACG AAGACTTCCTCGCCAAGATCAACGCCGTTCGCTACGCGTTCCTCGAGCTGGGTGTGGACGACGGCGTGATCGTTGCCCGTACCGACTCCCTGGGTGCCGG CCTGACCAAGCAGATCGCCGTGACCAAGCAACCGGGCGACCTGGGCGACCAGTACAACTCCTTCCTGGACTGCGAAGAGATCTCCGCTGCCGAACTGAAG AACGGCGACGTCGTGATCAACCGCGAAGGCAAGCTGCTGCGTCCCAAGCGCCTGCCGTCCAACCTGTTCCAGTTCCGTCAGGGCACCGGCGAAGACCGCT GCGTACTGGACTGCATCACCAGCCTGCAGAACGGCGCCGACCTGCTGTGGATCGAAACCGAGAAGCCGCACGTTGGCCAGATCAAAGGCATGGTTGACCG CATCCGTCAGGTCATCCCGAATGCCAAGCTGGTCTACAACAACAGCCCGTCCTTCAACTGGACCCTGAACTTCCGCCAGCAGGTGTTCGACGCGTTCGTC GCCGAAGGCAAGGACGTTTCCGCCTACGACCGCGCCAAGCTGATGAGCGTCGAGTACGACGAGACCGAACTGGCCCAGGTTGCAGACGAGAAGATCCGTA CCTTCCAGCGTGACGGTTCCGCCCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCACACTGCGGCCCTGTCCACCGACAACCTGGCCAA AGGCTACTTCGCCGACGAGGGCATGCTGGCCTACGTGAAAGGTGTTCAGCGCCAGGAACTGCGCCAAGGCATCGCCTGCGTCAAGCACCAGAACATGGCT GGCTCCGACATCGGCGACAACCACAAAGAGTACTTCGCTGGCGAAGCGGCTCTGAAGGCAAGCGGTAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGGAGCTGTTCACCGGCGGGCCTTCGGGCCCAGCCGGATGCCTCAAGGCCCCGGTAGCGATACCGGGGCCTTTTTTATTTGCACCTGCTGACCAGGGCG GAATACTCCCGCCTCGCCCGCCCCCGCCTTACTGGCCGTTGACCAGCCGCAGGCGCTTCTCGGTGAACACGCAGATCACCCCCGCGTTGTTGTGCATCAC CGGATGGTTGAAGTCGCAATAGGCCGCCGCCACGCTCAACGGCAACTGCTCGTTGCCCCAGCGGGCCGGCTTGAACCAGGCCAGCTCGCCCTCCTTGCAC AGCCGTGCATCGGCGTCGGAGGTGAAGGTGCACAACGCCGTCTGGTCCACCTGCTTGTCCAGGCAAGCGGTCAACGGCAGAACCATCAGAAGGGCCAGGA AGGGCTTGAAGGGAAGACGCATGCTGCTCACACCTCGGCAGTGGTTGAAGTGCCGATTTGAGCGAGCCGGCGCCCGCCAGTTCCGCAGCGCCGGGAAGAA
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQNEIKAVAALKEKYGSSWSAINPEYAARMRVQNRFKTGLDIAKYTAAIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSDFGPLPDQSMHEKTAVAGLIEELYTFLRQADARELDLLFTALDAARAAGDKAKEAEVQAQIDGYETHVVPIIADIDAGFGNPEATYLLAK KMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGVDDGVIVARTDSLGAGLTKQIAVTKQPGDLGDQYNSFLDCEEISAAELK NGDVVINREGKLLRPKRLPSNLFQFRQGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKGMVDRIRQVIPNAKLVYNNSPSFNWTLNFRQQVFDAFV AEGKDVSAYDRAKLMSVEYDETELAQVADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADEGMLAYVKGVQRQELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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