Pseudomonas sp. FeS53a, SZ55_RS14945

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. FeS53a scaffold12.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CACGACCTATCCTCAGTTCACCACGGTCCAGCTCGGCGTCGGGACGTTGCCCGGGGGTGAGCTTGTGATAACTGGTGATGGTCAAACGCAGTGGCATTGC GACTCCTTGCACATCTCACTGGAGAGGGGCGCGAACACCGAACCCTTCGATGCCGTGCAACAGCGCGCCGGTCCGGACCCTGCACGTGCCCCTGTTTCGC CAAGCCGCGCGAACACTCTCAGCGAAGAAAAATCTGATGGCTTTAGCCGACTTATCTTAGAACGAAAAAAGTAAACTTTTACAATCCGAAGAGGCTAGCG TCGACTAGCGCACATCTGTCGGTTGTGGTTCGCGTTTGTCTTGACAAGGGCAAAATACGACCCGAAAAATGGATAGGAGTTGCAGCGGTTGAGGCCAGAA AAATGGCGTCACCAAGACGTTGATCCAAGGGACTGTGATCAAGTCGTACGTCTGCTCCAGAACCATGCTCGCCCCAGCCCTGACAAGGAGAACACCCACC
DNA Sequence for Gene
>SZ55_RS14945
GTGGTGGACGTGTCGCACCTGCTTTCCCCCGTTTCCGCCGAGTCCCCGTGCGGTGACGACCTCGAATACGACGCCTCGTATCTCGAACTCGAACGAATCG CCCAAGGCCAGCCCGAACGTCAGATGGGCGACTCCGTGCTGCCTGCCGAACCGCCCGCGTGGCGCGACGTGCGCGAGCTGTCCAGCCAGTTGCTGGGCCG CAGCAAGGACCTGCGCATCGCCAACTACTTCCTGCAGAGCGCCATCGCCCTGGAAGGCCTCGCCGGCCTGGCCCAGAGCCTGACGCTGGTGCGCGAGCTG CTGACCCAGTTCTGGGATGGCGTGTACCCGCAGCTCGACGCCGACGACGACAACGACCCGACCTTCCGCATCAATGCCCTCACCGGCCTCGCCTCCGAGC CGGTGATCCGCCTGGTGCGCGAGGCGAACCTGACCAGCTCCCGTGCCTTCGGAGCGGTCACTTTGCGTGCTGCCCTGAACGCCCTCGACCTGCAGCGGTT CCCCAGCGAAACGCTGACCGCCGAGCAGCTCCAGGGCGCCTTCCGCGACACCGACCCGGCGCTGCTGGAAAGCACCCGCCAGGCCCTCACCGACGCCCAG TCCGCACTGGCGGCCATCGAGTCGACGCTGTCCGACCAGGTCGGCTCGGCCCAGAGCGCCGACCTCGCCCCGCTCAAGCAGCTGATCCGCCAGGCCCTGC AGATCGTCAAGGAGCACGCGCCCCTGGACGACAGCGCGCCGGCCGAAGACGCCGCGACGGGCGACGGCGACGGCAGTGCCGGCGAGAGCCCGGTCGCCGT GGCCAGCGCGCCGCGCGCCGCCGCCCACGAGATCAACAACCGCGACGACGTGTTGCGCACGCTGGACCGCATCCTCGCCTACTACGAGCGCCAGGAGCCC TCCAGCCCGGTTCCGATGCTGCTCAAGCGCGCCCGGAAGCTGGTCACGGCGGATTTCGCCGAGATCGTGCGCAACCTCATCCCCGATGGGATGTCGCAAT TCGAGAATTTGCGCGGCCCCGAGTCCGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCCGATCCGGCAGACCGTGCATCCGTTACCGGCTAGCGGCCGATGACGCCCCAACAGCCGTAAAGGCAGCGAAGGAGGAGCAACCATGGGTAGCACCAG CAGTCAGAAATTCATCGCGCGCAACCGCGCACCCCGCGTCCAGATCGAGTACGACGTGGAGCTCTACGGCGCCGAGAAGAAGGTGCAGTTGCCCTTCGTC ATGGGCGTCATGGCCGACCTCGCCGGCAAGCCGGCCGAGCCCCAGGCCGCCGTCGCCGACCGCAAGTTCCTGGAGATCGACGTCGACAACTTCGACTCGC GCCTCAAGGCCATGAAGCCGCGCGTCGCGTTCAACGTGCCCAACGCCCTGACCGGCGAAGGCAACCTCTCCGTGGACATCACCTTCGAGAACATGGACGA CTTCAGCCCGGCCGCCGTGGCGCGCAAGGTCGACTCCCTGAACCAGCTGCTCGAAGCCCGCACCCAGCTCGCCAACCTGCTGACCTACATGGACGGCAAG
Amino Acid Sequence
>type VI secretion protein ImpA
MVDVSHLLSPVSAESPCGDDLEYDASYLELERIAQGQPERQMGDSVLPAEPPAWRDVRELSSQLLGRSKDLRIANYFLQSAIALEGLAGLAQSLTLVREL LTQFWDGVYPQLDADDDNDPTFRINALTGLASEPVIRLVREANLTSSRAFGAVTLRAALNALDLQRFPSETLTAEQLQGAFRDTDPALLESTRQALTDAQ SALAAIESTLSDQVGSAQSADLAPLKQLIRQALQIVKEHAPLDDSAPAEDAATGDGDGSAGESPVAVASAPRAAAHEINNRDDVLRTLDRILAYYERQEP SSPVPMLLKRARKLVTADFAEIVRNLIPDGMSQFENLRGPESE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site