Pseudomonas sp. FeS53a, SZ55_RS14940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold12.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGTTCGAGTTCGAGATACGAGGCGTCGTATTCGAGGTCGTCACCGCACGGGGACTCGGCGGAAACGGGGGAAAGCAGGTGCGACACGTCCACCACGGT GGGTGTTCTCCTTGTCAGGGCTGGGGCGAGCATGGTTCTGGAGCAGACGTACGACTTGATCACAGTCCCTTGGATCAACGTCTTGGTGACGCCATTTTTC TGGCCTCAACCGCTGCAACTCCTATCCATTTTTCGGGTCGTATTTTGCCCTTGTCAAGACAAACGCGAACCACAACCGACAGATGTGCGCTAGTCGACGC TAGCCTCTTCGGATTGTAAAAGTTTACTTTTTTCGTTCTAAGATAAGTCGGCTAAAGCCATCAGATTTTTCTTCGCTGAGAGTGTTCGCGCGGCTTGGCG AAACAGGGGCACGTGCAGGGTCCGGACCGGCGCGCTGTTGCACGGCATCGAAGGGTTCGGTGTTCGCGCCCCTCTCCAGTGAGATGTGCAAGGAGTCGCA
|
|
| DNA Sequence for Gene |
>SZ55_RS14940
ATGCCACTGCGTTTGACCATCACCAGTTATCACAAGCTCACCCCCGGGCAACGTCCCGACGCCGAGCTGGACCGTGGTGAACTGAGGATAGGTCGTGGTA CGGAAAACGACTGGGTGCTCCCCGATCCCGAGCGCCTGGTGTCCAGCCAGCACTGCACCATCCAGAGCCGTGACGGCGTCTACTACCTCACCGACACCAG CACCAACGGCGTGATGCTCGCGCAGTCGGGCATCCGCCTGCGCCGGGGCAACAGCGAGCGCCTCAATGATGGCGAAGTGCTCAAGCTCGGCGAGTACGAG ATCCTCGTGCAGATCACCGCGCCGGCCACCTCGCAGCCGTTCTCCAGCGGCCCGGCCGCTGCCCCGTCGGTGGGCGGTGCGGACCCGTTCAGCAATTTCG ATGCGCTGATGAGCCGACAGGTCGCCTCCAGCGCCATCCCCGAACCCTACGCCGCGCCCTCGGCCACCCAGATGCCCATGGGCGGCTCGCCGCTGGACAC CAAGCCGGACCTGTTTGATTTCCTCAACCCGGCGCCACCGCCGGCGGCCGCGATTCCCGATCACGTGCCCGCCGAGCGCCATGACTTCCGCCCGCCGACG CCGGTGGCTCCGCCCGCGCCGCCGCCGCTGCCCAGCGTGACGCCGCCCCCGGCCGCCGCTGCCGAGGCCCATGCGATCCCGGCCGACTGGGACCCCTTTG CCGACCTCGGCCTCTCCACCCCGTCGGCGGCCCCGTCGATTCCGGTGCCGATGCCCACGGCCGCCACGCCCCAGGTGCCCGAGCCGGCGCCGATGCAAGT GCCCGAGGATTTCTTCGCCGGGATCGGCACGCCTGTCAGCGATGCTCAGGCCACGTCCGTGCCGCCGCCCCAGGCTGCCGCCCAGCCGGACCCGATGGCC GTGCTGTTCGGCAGCACCCCGTTCGAGCCGAGCCCCCAGGCCGAGGCGCCGGTGGCCGTGTCCGTGCAAGCGCCTTTGGACGTGCCCGTCGCCCCGGCGC TGACACCCACCGCCCAGGCCACCCACGCCGCCATTGCCACGCCGCCGCTCGAACCCCTGGCCGCGGCCATGCCGGTGCCGACGCCGCCTGCCGCCACGCC GCCCCAGGCGGTTCCCCCGGTTGCCGCGCCGCCCCAGGGGGCTGTCCAGGCGCCCCAGGGCGAGTTGCTGGAAGCCTTCCTGCGCGGCGCCGGGTTGTCC CAGCTGCGCATCGACCGTGCCGAGGCGGCCGCGCAGATGGAGGCCATCGGGCGCAGCTACCGGCTGATGGTGGAGGGGCTGGTGGACGTGCTGCGCGCGC GCTCCAGCCTCAAGGGTGAGTTCCGCATGTCGCAGACCATGATCCGCCCGGTGGAGAACAACCCGCTCAAGTTCGCCCCCAATGCCGACGAGGCGCTGCT GCTCCTGCTGCGCCACGGCAACGCCGCCTTCATGCCGCCGGACCAGGCGGTGAAGGAGAGCTTCGATGACGTCAAGGCGCACCAGCTGGCCGTCATGGCC GGTGTGCAGGCTGCCATCAAACACCTGCTCAAGCGCTTCGAGCCCGCCACCCTCGAAGCCCGCCTGAGCAAGCCATCGGGCCTGTCGGCCCTGCTGCCGG GTTCCCGGCAGTCGCAGTACTGGGAGTTGTTCACCGACCTCTACGCGAGCATCTCGCGGGAGGCCGAGGACGACTTCCAGGACCTGTTCGGACGCGAGTT CAGTCGCGCCTACGAGGAGCACAGCGCCAGGTTGCGCGGTGGCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCCGCCCGCCTGCCGGGGCGTGGCCAGGCCCGTCCCGCCGTCGCTTCCGTGGATCAACAGCAGTCAACGAGGACGTACCGAATGCCAAGGATTCTTCTG CTCGCCATGGCCGCGCTGCTCAGCGCCTGTGCCTCCGAGCCGGAAAAGGAAGCCCCGCCGCCGCCCACCGTGGTGCAGCTGCAGATCGAAGCCAGTGCCG ACCTCAACGCGCTGCCCGGCGGTGCCGGCACGCCGGTGCGGGTGCGCCTGTACGAGTTGCGCAACGCCACCACCTTCAGCCGTGCCGATTACTTCTCCCT GGTGGACAAGGCCCAGGCGACCCTCGCCGCCGACCTGGTCGCCCAGGACGAACTGCTGGTCAAGCCGTCCGATCGCCAGATGCAGGAGCGCACCCTCGAC GAGGGCACCCGGCAGCTCGGCATCGTGGTCGGCTACCGCGAACTGGATGCCGCCGTCTGGCGTGACGTCATCACCGTTCCGCTGAACCAGACCAGCGCCT
|
|
| Amino Acid Sequence |
>hypothetical protein
MPLRLTITSYHKLTPGQRPDAELDRGELRIGRGTENDWVLPDPERLVSSQHCTIQSRDGVYYLTDTSTNGVMLAQSGIRLRRGNSERLNDGEVLKLGEYE ILVQITAPATSQPFSSGPAAAPSVGGADPFSNFDALMSRQVASSAIPEPYAAPSATQMPMGGSPLDTKPDLFDFLNPAPPPAAAIPDHVPAERHDFRPPT PVAPPAPPPLPSVTPPPAAAAEAHAIPADWDPFADLGLSTPSAAPSIPVPMPTAATPQVPEPAPMQVPEDFFAGIGTPVSDAQATSVPPPQAAAQPDPMA VLFGSTPFEPSPQAEAPVAVSVQAPLDVPVAPALTPTAQATHAAIATPPLEPLAAAMPVPTPPAATPPQAVPPVAAPPQGAVQAPQGELLEAFLRGAGLS QLRIDRAEAAAQMEAIGRSYRLMVEGLVDVLRARSSLKGEFRMSQTMIRPVENNPLKFAPNADEALLLLLRHGNAAFMPPDQAVKESFDDVKAHQLAVMA GVQAAIKHLLKRFEPATLEARLSKPSGLSALLPGSRQSQYWELFTDLYASISREAEDDFQDLFGREFSRAYEEHSARLRGG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|