Pseudomonas sp. FeS53a, SZ55_RS14935

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. FeS53a scaffold12.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTCGCAGACCATGATCCGCCCGGTGGAGAACAACCCGCTCAAGTTCGCCCCCAATGCCGACGAGGCGCTGCTGCTCCTGCTGCGCCACGGCAACGCCGCC TTCATGCCGCCGGACCAGGCGGTGAAGGAGAGCTTCGATGACGTCAAGGCGCACCAGCTGGCCGTCATGGCCGGTGTGCAGGCTGCCATCAAACACCTGC TCAAGCGCTTCGAGCCCGCCACCCTCGAAGCCCGCCTGAGCAAGCCATCGGGCCTGTCGGCCCTGCTGCCGGGTTCCCGGCAGTCGCAGTACTGGGAGTT GTTCACCGACCTCTACGCGAGCATCTCGCGGGAGGCCGAGGACGACTTCCAGGACCTGTTCGGACGCGAGTTCAGTCGCGCCTACGAGGAGCACAGCGCC AGGTTGCGCGGTGGCTAGCGCCGCCCGCCTGCCGGGGCGTGGCCAGGCCCGTCCCGCCGTCGCTTCCGTGGATCAACAGCAGTCAACGAGGACGTACCGA
DNA Sequence for Gene
>SZ55_RS14935
ATGCCAAGGATTCTTCTGCTCGCCATGGCCGCGCTGCTCAGCGCCTGTGCCTCCGAGCCGGAAAAGGAAGCCCCGCCGCCGCCCACCGTGGTGCAGCTGC AGATCGAAGCCAGTGCCGACCTCAACGCGCTGCCCGGCGGTGCCGGCACGCCGGTGCGGGTGCGCCTGTACGAGTTGCGCAACGCCACCACCTTCAGCCG TGCCGATTACTTCTCCCTGGTGGACAAGGCCCAGGCGACCCTCGCCGCCGACCTGGTCGCCCAGGACGAACTGCTGGTCAAGCCGTCCGATCGCCAGATG CAGGAGCGCACCCTCGACGAGGGCACCCGGCAGCTCGGCATCGTGGTCGGCTACCGCGAACTGGATGCCGCCGTCTGGCGTGACGTCATCACCGTTCCGC TGAACCAGACCAGCGCCTACAGCCTCAAGTTCGGCGCACGCGGCGTGACCGTCGCGCCGGCGCCCATCACCGAACACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AAAGCGGAGACAGCCCATGTCATGGAACAACCGTGTGGTCTGGTCGGAAGGGATGTTCCTGCGTCCGCAGCACTTCCAGCAGCATGACCGTTACCTCGAA GCCCTGGTGGAAGGGCGCTGCCGTTCGCTGCGCCCCGGCAGCTGGGGGTTCTCCGAGCTGAAGATCGACGAGTCGCTGCTCTCCCAGGGCAAGCTGGCGA TCCTCTCCGCCCGTGGCCTGCTGCCCGACGGCACCCCGTTCGACATCCCCGGCGACGACGTGGCGCCGGAGCCGTTCGACGTGGAAGAGAGCCTGCGCGA CGGCATCATCTACCTGGCCCTGCCGCTCAAGCGGGCTGGTGCCCGTGACACGGTGGAGGAGGGCGAGGAGCTGGGCGGTGCCCGCTACCGCAGCCAGGTG CGCGAAGTGCGCGACGACAACGCCGCCTTCGAAAGCCGTGCCCCCGTGTCCATCGGCGGTCGCGCCCTGCGCCTGGTCACCGAGCGCGACGGCCTGGGCG
Amino Acid Sequence
>type VI secretion protein
MPRILLLAMAALLSACASEPEKEAPPPPTVVQLQIEASADLNALPGGAGTPVRVRLYELRNATTFSRADYFSLVDKAQATLAADLVAQDELLVKPSDRQM QERTLDEGTRQLGIVVGYRELDAAVWRDVITVPLNQTSAYSLKFGARGVTVAPAPITEH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site