Pseudomonas sp. FeS53a, SZ55_RS16540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGCATCATCAACGTCGCCTCTATCAACGGCGTATCCCCCGGCGAGTTCCAGGGCATCTACTCCGTCACCAAGGCCGCGGTCATCAGCATGACCAAGGT GTTCGCCAAGGAATGCGCCCAGTACGGCATCCGCTGCAACGCCCTGCTGCCGGGCCTGACCGACACCAAGTTCGCCTCGGCGCTGACCAAGAACGACGCC ATTCTCAACGTCGCCCTGCAGCGCATCCCGCTCAAGCGCGTGGCCGACCCGAGCGAAATGGCCGGCGCCGTGCTCTACCTGGCCAGCGCAGCCTCCAGCT ACACCACCGGCGTGGCCCTGAACGTGGACGGCGGCTTCCTGTCCTGATCCCCGCCCGGTCCGCCAGAAGAGGGAGCCGCCAGGCTCCCTTTTTCGTGGCC GGCCCTTTGACTTGCCCGGCGAAAACGCATACAGAACAGCGCCAGCCCACCTGGAATGCCTGCATGCCGTACGCCCACCCGCCCCGCGAAACCTGATGCC
|
|
| DNA Sequence for Gene |
>SZ55_RS16540
ATGGCCGAGACCCTCTTCTCCCGCGCCAGCTGGCTCAACTCCCTGCACATGTCCACCCTCACCGTCGCCTGCATGGCCGAGCGCGGCGTGGCGGCCGATG CCGTGCTGGAGGGCAGCGGCATCACTGTCGACGACCTGCGCGACCTGCGTCGGCTGATCAACCCCGGGCAGGAGCAGCAGGTGTTCGCCAACGCCGTGCG CCTGGCCGGCTCGCCCGCCCTCGGGCTGGAGCTGGGGCAGCGTACCCGCATCTCCGCCTATGGCCTGCTGGGCTACGCACTGCTCTCCGCCCCGACCCTC GGCGACGCCCTGCGCATCGGCCTCGGCTACCCCGTGCTGCTCGGCACCTACTTCCACCTGCGCCTGGAGCGCGAAGGCGAGCTGGCCTGGCTGCTGGCCA GCGGCTACGGCGAGGACGAAGCCCTGCGCCCGTTCAACACCGAGCTGTGCCTGGGCTCGTTGCGGGTCATCTGCGCCGACCTGCTCGGTCAGCCGCTGCC CGTGTCCGCCCTGGAGCTGGACTACCCCGAACCGGCTGGAGCCGCGCCCTATTACCGCCGCGTATTCGAGCGCGCCCCGCGCTTCGCCCGTGGTCGCAGC GGGTTCGGCTTCCCCGCCGCCTGGCTCGACCGGCCGCTGCCCCTGGCCGACCCGGTCACCCACAGCGAAATGCTCGAACAGTGCCGCCGGCAGAACGCTG AATTCGCCGCCCGCCGCGCCTGGCTGGAGCGGGTGCGCGATCTCCTGGCCCAGCGCCTCGCCACCCCGCCCGGGCTCGACGAACTCGCACGCGCCATGAA CACCTCCACCCGCAGCCTGCGCCGCCACCTCGCCCAGCAGCAGACCAGCTACCAGCAACTGCTCGACGAATTGCGCTTCGAACGGGCCAAGGCCCTGTTG CGCGAAGGCGACCTGCCCATCTACCGCATCGCCGAAATCCTCGGCTTCAGCGAAACCGCCAGCCTCCGCCACGCCTTCCAGCGCTGGAGCGGCCAGCCAC CCAGCCACTTCCGAGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGACTCACGACCCGGCCGGCGATGGGGCTACGACGGCAACCGTAGGATGGGCTGAGCTGTGCGAAGCCCATCGTTGGCCGTGCGACGCGGGCTCGATGCG GTTCGCCGAGCTCACCGCATCCTACGGGCGGTAGCCGGTCCGTAGGCGGGGTATAAGACCTGACGTGGCCAGCCATGTTGGCCATTTCGATCCCCTATTG GCCATTACCCCCACTGCTCAAAGCGGGGGCGGCGGCCGAGAATCGGGCTCACCAACAACAAGAACCCCGATGAGGTACGCCCCCATGCTGACCGTGTACA GCGACGATCATCGCCTCCACTTCGGCCAGTCCGAACTGGTCGACGGCAAGCTCCAGCCCTGTTTCGAAATGCCCAGCCGCGCCGACACCGTGCTCGCCCG CGTGCGCCAGCAGGCGCTGGGCGAGGTGATCGAGCCGCGTGACTTCGGCCTCGACCCCATCCTCCGTGTGCATGACGCCGGCTACGTGAAGTTCCTCCAG
|
|
| Amino Acid Sequence |
>AraC family transcriptional regulator
MAETLFSRASWLNSLHMSTLTVACMAERGVAADAVLEGSGITVDDLRDLRRLINPGQEQQVFANAVRLAGSPALGLELGQRTRISAYGLLGYALLSAPTL GDALRIGLGYPVLLGTYFHLRLEREGELAWLLASGYGEDEALRPFNTELCLGSLRVICADLLGQPLPVSALELDYPEPAGAAPYYRRVFERAPRFARGRS GFGFPAAWLDRPLPLADPVTHSEMLEQCRRQNAEFAARRAWLERVRDLLAQRLATPPGLDELARAMNTSTRSLRRHLAQQQTSYQQLLDELRFERAKALL REGDLPIYRIAEILGFSETASLRHAFQRWSGQPPSHFRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|