Pseudomonas sp. FeS53a, SZ55_RS16105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. FeS53a scaffold1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACGTGGTCGGCTCGCGGGGCTCGGTGCTGCCGTTCTTCCGCAAGCTGCTGGCCGACGGCGCCCGCGAGCTGCCGATCACCGATGCGCGCATGACCCGCT TCTGGATCACCCTCGACCAGGGCGTCGACTTCGTCATGCGCAGCTTCGAGCGTATGCAGGGCGGCGAGCTGTTCGTGCCGAAGATCCCCTCCGCACGCAT CACCGACCTGGCCGAGGCCCTCGCACCGGGCCTGCCCCATCGCCTGGTGGGCATCCGCCCGGGCGAGAAGCTGCACGAGATGATGATTTCCCGCGATGAC AGCTCCCACACCTGGGAATTCGACAGCCACTTCGTCATTGCCCCCTCCATCAACTTCAACATGCAGTACGACTACGCCTGTGACGGCCTGGGAGGGATCG GGCGGGCCGTGGAGGAGGGCTTCGAGTACGTCTCTGACAGCAATCCCCACTACCTCAGCGTCGCCGAACTGCGCGAGCTGGCCGAGGCCTGGTCCTGAGC
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| DNA Sequence for Gene |
>SZ55_RS16105
ATGATTCCCTACGGACGCCAGAGCATTTCCCAGGCGGACATCGACGCCGTCGTCGAGACCCTCAACTCCGACTGGCTGACCCAGGGGCCGGCCATCGAGC GTTTCGAGGGCGCCTTCGCCGCCCGCTGTGAGGCCGCCCACGGCATCGCCGTCAGCAACGCCACGGCAGCCCTGCACATCGCCTGCCTGGCCCTCGACCT GGGCCCGGGGGACTGGCTCTGGACCAGCCCCAACACCTTCGTCGCCAGTGCCAATTGCGCGCTCTACTGCGGCGCCCAGGTGGACTTCGTCGACATCGAC CCGCGCACCCTCAACCTCGACGTGGACCTGCTGGAGGTTCGCCTCGCCCAGGCCGAGCAGCGCGGCCGGTTGCCCAAGGTGCTGGTGCCGGTGGCCTTCG CCGGGCAGAGCTGCGACATGGCGCGCATCGCCGCGCTGGCCCGGCGCTACGGCTTCCGCGTGATCGAGGACGCCTCCCACGCCGTCGGCGCCGCCTACCT CGGGCGCCCGGTGGGCTGCGGCGCCCATGCCGACATCAGCGTGTTCAGCTTCCACCCGGTGAAGATCATCACCACCGGCGAGGGCGGCATGCTCACCACC CAGGACCCGCACCTGGCGGAGCGCCTGCGGCGCCTGCGCAGCCACGGCATCACCCGCGACCCGGCCGCGATGACTGAAGCCAGCCACGGCCCCTGGTACT ACCAGCAGCTGGAACTGGGCTTCAACTACCGCATGACCGACCTGCAGGCCGCCCTCGGCTTCTCCCAGTTGCAGCGCCTGGAGGCCTTCGTCGCCCGTCG CCGGGCCCTGGCCGAGCGCTACGACGAGTTGCTCGCCGACCTGCCGCTGCGTCTGCCGGGGCGCCAGGAGGGGGCCGACTCGGCCTGGCACCTCTACCCG GTGCGCCTGCGGCTGGACGCCATCCGCCGCAGCCACCGCGAAGTGTTCGAGGGACTGCGGGCCGCCGGCATCGGCGTCAACCTGCACTACATCCCGGTGC ACCTGCAGCCTCATTACCAGCGGCTGGGCTTCGCCCCGGGCGACTTCCCCGAGGCCGAGCGCTACTACGCCGAGGCCCTGAGCCTGCCGCTCTTCCACGG CATGACCGATGACCAGCAGGAGCGGGTGGTGCAGGCACTGACCACCCTCCTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGACGCGCCATGCGCGAACTGACCGAGCAGGAACGTTTCTGGCAGGGCGAGTTCGGTGACGACTACGTCGACCGCAACGACGGCGAGCGCCACGTG GCCAGTGCCACCGCCTTCTTTGCCCAGGCCCTGCGCCGTGCCGGGCGGCTCGACAGCCTGCTGGAGCTGGGCACCAACCGCGGGCTCAACCTCCAGGCGC TGCACCGGCTGCTGCCGGATGCTGCCCTGCATGGCGTCGAGCTGAATGCCAAGGCCCACGCCATCGCCCAGGGGCTGGGCATCGCCGAGGTCTGGCACGG CTCGCTGTTCGATTACCCGGTGCACCAGCCGGTGGACCTGGCGTTCACCCGTGGCGTGCTCATCCACCTGCCGCCCGAGCTGCTGCCCAAGGCCTACGCC AAGTTGTACGAGGCCAGCCGGCGCTACGTACTCGTCGCCGAGTACTACAACCCCTCACCGGTGGAGGTGAGCTACCGGGGGCACGCGGGCAAGCTGTTCA
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| Amino Acid Sequence |
>spore coat protein
MIPYGRQSISQADIDAVVETLNSDWLTQGPAIERFEGAFAARCEAAHGIAVSNATAALHIACLALDLGPGDWLWTSPNTFVASANCALYCGAQVDFVDID PRTLNLDVDLLEVRLAQAEQRGRLPKVLVPVAFAGQSCDMARIAALARRYGFRVIEDASHAVGAAYLGRPVGCGAHADISVFSFHPVKIITTGEGGMLTT QDPHLAERLRRLRSHGITRDPAAMTEASHGPWYYQQLELGFNYRMTDLQAALGFSQLQRLEAFVARRRALAERYDELLADLPLRLPGRQEGADSAWHLYP VRLRLDAIRRSHREVFEGLRAAGIGVNLHYIPVHLQPHYQRLGFAPGDFPEAERYYAEALSLPLFHGMTDDQQERVVQALTTLLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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