Pseudomonas weihenstephanensis DSM 29166, TU86_RS13115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29166 4_571018_39.6538, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGAAAAATGCCGCTGTGGCGAAGGAAGAAACCTTTGGCCCGCTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCTGAAGTGATTGCCATGGCCAACGAC ACTGAGTTCGGCTTGGCCTCGTATTTCTATGCGCGCGACCTGAGCCGTGTGTTCCGTGTGGCAGAAGCCCTGGAATACGGCATGGTCGGTGTCAACACCG GTCTGATTTCCAACGAAGTTGCGCCGTTTGGCGGCATCAAAGCGTCGGGCCTGGGCCGTGAAGGCTCCAAGTACGGCATCGAAGACTACCTGGAAATCAA ATATCTCTGCCTGGGGATCTAAACCCGGCGGGTGGTTCAAGCAGAAGGGGCACGAGAGCGATGCGTCTTCTGCGTTTCAAACTGTTAACTTTTGTGGCCA GGTGCGCCATGCCAGTCGATCATCGCATGCTGGCATGAGTGTCTCCCTGGCGCGTCAGCCTTGAACCACGCTGCTTGATGAGCAGCGAATGAGGAACACC
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| DNA Sequence for Gene |
>TU86_RS13115
ATGAGCAACAAGACCAACGCATCCCTGATGAAACGCCGTGAAGCCGCTGTCCCGCGCGGTGTTGGCCAGATTCACCCGATCTTCGCGGAGTCGGCGCACA ACGCGACCGTGACTGACGTTGAAGGTCGTGAGTTCATCGACTTTGCAGGCGGTATCGCCGTGCTCAACACCGGTCACCTGCATCCCAAAATCATTGCGGC CGTGCAAGCGCAACTGACCAAGCTGACTCACACCTGCTTCCAGGTACTGGCCTATGAGCCGTACGTTGAGCTGTGTGAAAAAATCAACGCCAAGGTGCCG GGTAATTTCGATAAAAAAACCCTGCTGGTCACCACGGGTTCTGAAGCGGTCGAAAACGCCGTGAAAATCGCCCGTGCTGCCACGGGTCGCGCGGGCGTCA TCGCATTCACCGGCGCTTACCACGGTCGCACCATGATGACCCTGGGCCTGACCGGTAAAGTCGTGCCGTATTCGGCGGGCATGGGCCTGATGCCAGGCGG CATCTTCCGTGCGCTGTTTCCGTGCGAGCTGCATGGCATCAGCGTGGATGACTCCATCGCCAGCATCGAGCGCATCTTCAAAAACGACGCCGAGCCTAAA GACATCGCCGCCATCATCATCGAGCCGGTACAGGGCGAAGGTGGTTTCTATGTGGCGCCAAAAGCGTTCATGGCACGCCTGCGCGAGCTGTGCGACAAGC ACGGCATCCTGCTGATCGCCGACGAAGTGCAAACCGGCGCCGGTCGTACCGGTACCTTCTTCGCCATGGAGCAGATGGGCGTGACCGCGGACCTGACCAC CTTTGCCAAATCCATCGCTGGCGGTTTCCCGCTGGCCGGTGTGTGCGGCAAGGCTGAACTGATGGACGCCATTGCGCCAGGCGGTCTGGGCGGCACCTAT GCCGGTAGCCCGATTGCTTGTGCCGCTGCATTGGCGGTGCTCGAAGTGTTTGAAGAAGAGCACCTGCTGGACCGTTGCAAGGCGGTCGGCGAGCATCTGG TGACGGGCCTCAAAGCGATTCAGGCCAAGTACCCGGTCATCGGTGATGTCCGTGCGCTTGGCGCAATGATTGCTGTCGAGCTGTTTGAAGGCGGCGACTC GCACAAACCTAACGCGGCAGCCGTGGCTCAAGTAGTCGCCAAGGCGCGTGAGAAAGGTCTGATTCTGTTGTCGTGCGGCCCTTACGGCAACGTGCTGCGG GTGCTGGTACCGCTGACCTCGCCTGACGAGCAACTGGACAAAGGTCTGGCCATCATCGAAGAATGCTTCGCTGAATTGGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCCTGACGTCTGAGTTGTGATCGGCTACACAAAAAAACCGCTTCGGCGGTTTTTTTTCGTCTGTGAAACGCATTTAAGGCATTTTGCCTGTATCCGACG CGTGGCATTGACTAAGGTGCATGGACATCCCTCGGAGTGCATTCATGACTGCTGTTGAAGTATCCGCCACGCCGAGCGTGCTGATTGCCGAGACTGACCC CTGGTCTCGGGACCTGCTCAAACAAGTGGTGCTGAGCGTGCGTTGCGACGCGCAACTGGACGTGTGTGGCGAAGGCCAGCAAGCGCTCGCGTTGCTGAGT GAAAAGGACTATGACCTGGTGATTGCGGACTGGGACTTGCCGGGCGTAAGTGGGTTGGACCTGCTGCGCAATGTGCGTCAGCGCCGCCGCCAGCCGGTAT CGCCATTCATCTTGTTAAGCAGCCGCAATGACAGCGCCAGCGTGCGTCAAGCGTTGCCGCTGGCGCCCACGGCTTACCTGACCAAGCCGCTAGACATGCC
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| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSNKTNASLMKRREAAVPRGVGQIHPIFAESAHNATVTDVEGREFIDFAGGIAVLNTGHLHPKIIAAVQAQLTKLTHTCFQVLAYEPYVELCEKINAKVP GNFDKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRALFPCELHGISVDDSIASIERIFKNDAEPK DIAAIIIEPVQGEGGFYVAPKAFMARLRELCDKHGILLIADEVQTGAGRTGTFFAMEQMGVTADLTTFAKSIAGGFPLAGVCGKAELMDAIAPGGLGGTY AGSPIACAAALAVLEVFEEEHLLDRCKAVGEHLVTGLKAIQAKYPVIGDVRALGAMIAVELFEGGDSHKPNAAAVAQVVAKAREKGLILLSCGPYGNVLR VLVPLTSPDEQLDKGLAIIEECFAELA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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