Pseudomonas weihenstephanensis DSM 29166, TU86_RS10260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29166 3_684107_40.2885, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGGCGGTTTCGGAGCAGATCACGCTGTGAAAGCTCTGGCACAGTGATGACAGGGCCAGCGAGTTGGCGGCAGTGCCATTGAACGCGAAGTACACCTCG CAGTCGGTTTCGAACAGTTTGCGAAAGTCATCTGCTGCGCGCAGCGTCCATTCGTCATCGCCGTAAGAGCGTTGGTGGCCGTGGTTGGCTTTTTCCATGG CAGACCAGACTTCGGGGCAGATACCGGAGTAGTTGTCGCTGGCGAATTGTTGGCTCTTGTCAGTCATTTCCCGGTTCCATGGTCGAAGATTGTCGTGCAC TTTAGCCAAGAAATCCGCGAGTGCACAGTTGTGGGTTAAAACCCGGAAATACCTTACAAGGAACTGTTTGAGGGTGTATGTCGTAAATGCACCCTTGCGT GGCGTCCTTGGGCATTTGGTCACCCCGCGCCCGCTCTACCATCGGTCTTAAAGGGCAAGCCCTCACCGACTATGGCGCGCGGGCGCCGGGAGTACAGCCT
|
|
| DNA Sequence for Gene |
>TU86_RS10260
ATGCAACGCTATTCAGGCTTCGGCCTGTTCAAACACTCCCTCAGCCACCACGAAAACTGGCAAAAGATGTGGCGCACGCCCACGCCGAAAAAGGTCTACG ACGTGGTGATTGTCGGTGGCGGCGGGCATGGTTTGGCCACGGCGTATTACCTGGCCAAAGTCCACGGCATCAGCAACGTGGCGGTGGTTGAAAAAGGCTG GTTGGGCGGTGGCAACACCGCACGCAACACCACCATCGTGCGCTCCAACTATTTGTGGGACGAGTCGGCGCACTTGTACGAACACGCGATGAAGCTGTGG GAAGGCTTGTCTCAAGACCTCAACTACAACGTCATGTTCTCCCAGCGCGGCGTTTACAACCTGTGCCACACCCTGCAAGACATGCGCGACTCAGAGCGAC GTGTCAGCGCCAATCGCCTGAACGGCGTGGACGGCGAATTGCTCAACGCGCAACAAGTGGCAGACGAAATCCCCTACCTCGACTGCTCTAAAAACACCCG TTACCCGGTGATGGGCGCCACCGTGCAGCGGCGTGGCGGTGTGGCCCGCCATGATGCGGTGGCCTGGGGCTTTGCCAGGGCGGCCGATGCGCTGGGTGTG GACTTGATCCAGCAAACCGAAGTGCTGGGCTTTCGCAAGGAAAACGGCGTGTGCATCGGTGTCGAGACCAGCAAGGGCTTTATTGGCGCCAAACGCGTGG GCGTGGTCACCGCCGGTAACTCCGGGCACATGGCGCGCCAGGCAGGCTTTCGCTTGCCGATTGAGTCGCACCCGCTGCAAGCGCTGGTGTCCGAGCCGAT CAAACCGATTATCGACAGCGTGATCATGTCCAACGCGGTGCATGGCTACATCAGCCAGTCCGACAAGGGCGACTTGGTGATCGGTGCGGGCATCGATGGC TGGGTCGGTTATGGCCAGCGCGGCTCGTACCCGGTAATCGAGCACACGATTCAGGCGATTGTAGAGATGTTCCCGGTGTTGTCCCGTGTGCGCATGAACC GTCAATGGGGCGGCATCGTCGACACCACCCCCGACGCCTGCCCGATCATCTCCAAAACGCCGCTGCCTAACGTGTTCTTCAATTGCGGCTGGGGGACGGG CGGGTTCAAGGCCACGCCTGGCTCGGGCCATGTGTTTGCGGCCAGTTTGGCCACCGGTGAAATGCACCCGCTGGCGGTGCCATTCTCCCTCGAACGTTTC CACAACGGCGCGTTGATCGACGAACACGGCGCCGCCGCGGTCGCTCACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAGGAGAAATACCGATGCTGCATATCTTCTGTCCTCATTGCGGCGAACTGCGCTCGGAAGAGGAGTTTCACGCGGCCGGTCAGGCGCACATTCCACGCCC GCTTGACCCTGATGCCTGCACCGACGCGCAGTGGGGCGATTACCTGTTCTTTCGTGACAACCCCCGCGGGCTGCACCACGAGCTGTGGAACCACGTGGCC GGTTGCCGTCAGTTTTTCAACGCCACGCGCAATACCGTGACCTACGAAATACTGGAAACCTACCCCATTGGTACGGCGCCGCAATTCACTGAACAGCGGC CTCCGGCGACCGCGACTGCTACCAGCGCGCAGGGAGAAAAGGTATGAGCCAGACCCATCGCCTGGCCAATGGCGGCCGTGTGGATCGCAGCAAAGTGCTG ACCTTTACCTTCAACGGCCAACCCTACTCAGGTTACGAAGGCGACAGCCTGGCCGCCGCCCTGTTGGCCAACGGTGTCGACATCATTGGGCGCAGCTTCA
|
|
| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQKMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKVHGISNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDMRDSERRVSANRLNGVDGELLNAQQVADEIPYLDCSKNTRYPVMGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVLGFRKENGVCIGVETSKGFIGAKRVGVVTAGNSGHMARQAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG WVGYGQRGSYPVIEHTIQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIISKTPLPNVFFNCGWGTGGFKATPGSGHVFAASLATGEMHPLAVPFSLERF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|