Pseudomonas weihenstephanensis DSM 29166, TU86_RS04290
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29166 2_745912_38.5789, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGCCTGAACAAGAAACGCCGCAGTGGCATGTCAACTTGAGCTACTTGCAGGATTTGCGTCGCGCGGTCAGTCAGGCGCAAGGGCTAAGCCCGTATGCG CGACCTGCTGGCCTGGCAACCAGTGTTTTCAAACCCTTGGGGTTGCACGTGTTGGTGGTTGAAGATAACGCCATCAGCCAGTTGATTCTCAAAGACCAGC TCGAAGAGCTGGGCTGCACGGTCGACCTGGCCTCGGACGGCTTGGAGGCGCTGGCGCTGTGGCAGCCGGCGACCTTTGACCGGGTGCTGACGGACGTCAA CATGCCACGTATGAATGGTTACGAACTGGCCGCACAATTGCGCCAGCTCGATAGCAGCGTGCCCATCATTGGGGCCACCGCCAACGCGCAGCACGAAGAG CGTGCCCGTTGCCTGGCGGTGGGGATGAATGAATGCCTGGTCAAACCGTTTGGCCTCAGCGCCTTATTTACTTGCCTTGAGCAAACCCAGAGGAAGCCGC
|
|
| DNA Sequence for Gene |
>TU86_RS04290
ATGCCGTATAGCGTTCTGATCGTCGAGGACCATCCTTTTCAGCATGAATACTTGCTCAACCTGTTTCGTGACTTGGGCAATATTCGGGTCGAAGCGGCCC GTGACGGCAATGAAGCGTTTGAGTGGCTGCAAAAGCGGCCTTTTGATCTGGTGCTCACCGATTTATTGATGCCAGGCATGGACGGCGTGCAACTGATCCA GCGGCTGGCATCTTTGCCGCACAAACCGGCACTGGCGATCATGAGCGCGGCCTCGCGGCGCATGATTGTCAGTGCCAGCCTGGTGGCGCAAAGCATGGGG TTGACGGTGGTAGGGCAATTGTCCAAACCCGTGGTCCCCGCGGCGGTCCGTACCGTGATGACCACACTGGACAAATTACTCACCAGCGATCAACCCCTTA AGCGCGAGCCGTTGGTGCTGGAGCGTGAAGCCCTGCGCGCGGCAATGGCAAGTGGTGCGTTGCAAGCGTGGTTCCAGCCCAAAAAATCACTTCATGACGG CCACATCGTGGCGGCCGAGGCCCTGGCGCGCTGGGTTCATCCTGAGCTGGGATTGTTGATGCCCGCTGACTTTTTGCCGTCGTTGGTGGGGCATGGGCTG GAAAAAGAACTGTTGCTGCTGTTTATCAAGCAAACCATTGCCGCCCAGAGCAGTTGGGCCAGCCAGGGCTATGACATTCCCGTGTCGATCAACTTGCCCA CCCACTTGCTCGATGACGATGACCTGGCCGACGCCTTGCATGATTACGTGCGCGCCGAAGGCGGGATACCGGCCAAGCTCGCCTTTGAGTTGATGGAGTG CTCCACCACGCAGGGCATCAGCAAGTATTACGCTGGCGCCTGCCGGTTGCGCATGAAAGGTTTTGGGCTGGCCCAGGACGACTTTGGACAGGGTTTCAGC TCGTATTTCAATTTGGTGTCGACACCGTTCACCGAACTGAAAATCGACCGTGCGCTGGTGCATGGCTGTGTCGAAAATGAAAACCTGGCCTCGGCGTTGG CCAGTATTGTGGCCTTGGGCCGCCAGTTGGGTCTGGAGGTGGTCGCCGAAGGGGTCGAGAGTCAGGAAGAGCTGGCCCTGCTGCGCAAGCTCAACTGTGA CCGGGTGCAGGGTTTTCTGATATCGCGTGCCGTATCATCAGGTCACTTCGGGCACCTGCTGCATGAGGATGCTCCGCCGCTGCTGCACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCCGGCAAGTGGCAGCATCTGGCCTGAAAATGGACCGCCTTCATCCGCCGCCATCCGCTCGTCTACGCTATACGAGCCTGAGCCCGTTGGGCCATCACG CCAAAAACAGGAAGTAACATGACCGCCGACAACACCTCGCTGGGCAAACTCGCATTGAGTTCCATGCGCTTGAACCGTGGCGTCTTGATTTTGGTGGGCG TCGCGGTGGTGCTGGTGGGCACCTGCGCCTGGGCGTTGCAGCGCTTGCTGGAAGTGGAAGTGAACAAGGTCGATTATCACTTTTCACTGCTGGTGGAGAA CCTGAATGAAAACCGTCTGTTTTTGAACAACGTTAACAGTGCCGTCAAAGATGCTCAGGATGTATTGGACAAGAACATCACCCCGCTGCAAAGCGCTCTG GTGTTTCAAGGCGCCGGGATGAACATCTATGAGGGCAAGGAGTTCTCGTTTTCGACACCGTTCAACCTGGCGCAAAGCGATGCGAGCCAGACGATTAGCC
|
|
| Amino Acid Sequence |
>diguanylate phosphodiesterase
MPYSVLIVEDHPFQHEYLLNLFRDLGNIRVEAARDGNEAFEWLQKRPFDLVLTDLLMPGMDGVQLIQRLASLPHKPALAIMSAASRRMIVSASLVAQSMG LTVVGQLSKPVVPAAVRTVMTTLDKLLTSDQPLKREPLVLEREALRAAMASGALQAWFQPKKSLHDGHIVAAEALARWVHPELGLLMPADFLPSLVGHGL EKELLLLFIKQTIAAQSSWASQGYDIPVSINLPTHLLDDDDLADALHDYVRAEGGIPAKLAFELMECSTTQGISKYYAGACRLRMKGFGLAQDDFGQGFS SYFNLVSTPFTELKIDRALVHGCVENENLASALASIVALGRQLGLEVVAEGVESQEELALLRKLNCDRVQGFLISRAVSSGHFGHLLHEDAPPLLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|