Pseudomonas weihenstephanensis DSM 29166, TU86_RS01655
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29166 1_855826_38.97, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCAGCGCAGGGCTTTTTCAGGGGGCGGGTTGTCTATATTTTGATCGCACCACACAGAACTTGCTCAGCAAGAAGGTCTTTGAAATGTCCAGCAGTATGG GTATGGCCAGCGTTTTCGCTTTGTCGTCATTGTTGTTGTCGCCCTTGGCCATGGCGGAAGAATCGCCCGCGTTCGTCGCGCAAAATGCAGCCCGCGCAGC CGCCTATGAGCAGCACCAACAGGAACTGACGGCCAACCACCAAAACGAGGCCAAGCCTCAGTCATCACAGGTCAAAACCAGCGCTAGCGTTGATACCAAA GACAGCTGATTGCCCACCTGAAGTCTTCCCGACCCAGTCAGTCACGGCCTTTATATGTGACTGATTGTTTCAAAAGCCGCTACTATAGCGGCTTTTTTTT GTTTTAAAAAAAGCCGCCACAGCGTTTGGCGTCTTTGAATACGCATTCAAATGCCTACAGACAATAAAAACTGCCACCCCAAAAAAGGAGCCATTTACCG
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| DNA Sequence for Gene |
>TU86_RS01655
GTGAAGAACACACTCAAGCTCAGCCCGCTATTCCTCGCGCTGGCCGCAACGATCCCGACATTCGCTCACGCTGACGATGACACCGCCAAGGAAGGTTTTA TCGAAGGCTCCAGCCTCAAGCTGCACCTGCGCAATTACTACATGAATCACGACATTCGCAGCCCGAAAGGCGATGACAGCAAAGAGTGGGGCCAGGGGTT TATTGGCACGTTTGAGTCGGGGTTCACCCAAGGGGTCGTAGGCTTTGGTGTGGATGCCTACGGCATGCTCGGCCTCAAACTTGATGGCGGTGGCGGCACC GACGGCAGCAGCATCCTGCCGGTCAGCGATGGCAACGGCAAGGCGCCGACCGAGTTTTCGTCTGCGGGCGCAGCGCTGAAAATGCGCGCGTTTGATACCG AGCTTAAAGCCGGTGACATGTTCCTCTCCAACCCGGTCATTGCCGGCGGCGAGACGCGTATGCTGCCGCAGGCTTTTCGCGGCGTCACGCTGACCAATCA CAGCCTGGAAGGCTGGATGTTCGAAGGTGGGCAGGTCAGTTTCGAAAAACCGTACAACCAAAGCGGCATGCGCCGCATGACCACCATGTACGGCGACCTC AAAGGCCAGAGCAGCCAACACATCAACTGGGCCGGGGCCTCGTGGAGCGGCGTACCGGCGCTGACCAGCAACCTCTATGCCGCCGAGCTCAAGGACATCT GGAATCAGTACTACTACGATCTGGATTACACCTACGCCCTGAACGAAAGTGTCAGCCTCAACCCCGGCCTGCACTTCTACCACACTCAGGACACGGGCAA AGCGCTGCTCGGCGATATCGACAACAACACGTTCAGCCTGCACTTTGCCGTGGCCGTCGCCGGGCACACGGTCACTGCCGTGTACCAGCGGGTAAACGGC AACACGCCGTTTGACTACATCTATCAGGGCGACAGCGTGTACCTGGACAACTCCCAGCAGTACTCGGACTTTAACGGCCCGAACGAGCGCTCCTGGAAAC TGCAATACGAATATGACTTTGCCGGGCTGGGTCTGGCGGGCCTGACGTCGACGGTGTCGTACTCGCGTGGTGAGTTGGACCTGACCAAGGTTGACCCCAA CAGCGTCGGCTACAGCAACTGGTACAACGCCGACGGCAAGCATGCCAAACATTGGGAACGCGACCTGACCGTCAAATACGTGCTGCAAGAAGGCCCGGCG AAAAACCTCGGCGTCGCTCTGCGCTGGTCAGCCAACCGCGGTAACGATGCGTATCAGGCGGTGGACAACAATGTGGATGAGTACCGCGTGATCATCGATT ACCCGCTGGATGTGTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGTGAGCCAAGCCGACAAGTAGCGATCCAGATTCAGGACTGTACCCAGCCACAGCGGTGCAGCCCTGATTCAGCCATCAGCACGGTTGGGTGCACAAA AAAAAGGCCACCCGAGGGTGGCCTTCAAAAACTAGAGAAAGAAGTTTTACTTAAACTGCCGCAACCGGACGCATGTACGAGATCGGTGCAGTGCTGGCAT CTTCAAAGGTCACGACTTCCCATGCATCTTTCTGCTCAATCAGCTTGCGAAGCAGCTGGTTGTTCAGTGCGTGGCCAGACTTGAAGCCTTTGAACTCACC AATCAGGCTATTGCCCAACAGGTAGAGATCGCCAATTGCGTCGAGGATCTTGTGCTTCACGAATTCGTCTTCATAGCGAAGACCGTCTTCGTTCAGTACG CCGTCTGCGTCGACAACGATCGCGTTTTCCACGCTGCCACCGAGTGCGAGGTTGTGCTTGCGCAGGTACTCGATATCACTCATGAAGCCAAAGGTACGGG
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| Amino Acid Sequence |
>porin
MKNTLKLSPLFLALAATIPTFAHADDDTAKEGFIEGSSLKLHLRNYYMNHDIRSPKGDDSKEWGQGFIGTFESGFTQGVVGFGVDAYGMLGLKLDGGGGT DGSSILPVSDGNGKAPTEFSSAGAALKMRAFDTELKAGDMFLSNPVIAGGETRMLPQAFRGVTLTNHSLEGWMFEGGQVSFEKPYNQSGMRRMTTMYGDL KGQSSQHINWAGASWSGVPALTSNLYAAELKDIWNQYYYDLDYTYALNESVSLNPGLHFYHTQDTGKALLGDIDNNTFSLHFAVAVAGHTVTAVYQRVNG NTPFDYIYQGDSVYLDNSQQYSDFNGPNERSWKLQYEYDFAGLGLAGLTSTVSYSRGELDLTKVDPNSVGYSNWYNADGKHAKHWERDLTVKYVLQEGPA KNLGVALRWSANRGNDAYQAVDNNVDEYRVIIDYPLDVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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