Pseudomonas weihenstephanensis DSM 29166, TU86_RS21050 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29166 12_133928_36.2809, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGAAATTGGCGACAACCTTGATGTGCTGGTGATCGACACGGCCGCGGGTATCGGCGAATCGGTGGTGAGTTTTGTGCGCGCCGCCCAGGAAGTGC TGCTGGTGGTGTGCGACGAACCCACCTCGATCACCGACGCCTACGCGCTGATCAAACTGCTGAACCGCGATTACGGCATGAACCGTTTCCGGGTGCTGGC CAACATGGCCCAAAGCCCGCAAGAGGGGCGCAACCTGTTCGCCAAATTGACCAAAGTCACGGACCGCTTTTTGGACGTCGCCCTGCAATACGTAGGCGCT GTGCCGTACGACGAATGCGTGCGCAAAGCGGTGCAAAAACAGCGTGCCGTTTACGAAGCCTTCCCGCGTTCAAAATGCGCACTGGCGTTCAAGGCCATTG CACAAAAAGTTGACACCTGGCCTTTGCCAGCTAATCCACGTGGGCACCTGGAGTTCTTTGTTGAGCGCCTGGTGCAGCAAACCAGTGCGGGAACGGCCCA
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| DNA Sequence for Gene |
>TU86_RS21050
|fliA
ATGACAGCCAGCGGCTATCGCATGTACAGCAAGTCGTCGCGTGACAGCCAATATGAGCTGATCGAACGTTACGCGCCTTTGGTTAAACGCATCGCGTATC ACCTGCTGGCGCGATTGCCCGCCAGCGTGCAGGTAGAAGACTTGATCCAGGCCGGGATGATCGGCCTGCTTGAAGTCTCGACCAAATACGATGCGAGCAA AGGGGCGAGTTTCGAAACCTACGCGGGTATTCGTATCCGTGGCGCGATGCTGGATGAAGTGCGAAAAGGCGACTGGGCTCCCCGCTCGGTGCACCGCAAC ACACGTATGGTCAGCGACGCCATTCGGGCAATTGAAGCAAAAACCGGTTGTGACGCTAAAGATCACGAAGTTGCGGCCGAACTCAATTTAAGCCTGGATG ATTATTACGCCATTTTGAATGACACCTTGGGCAGCCGGCTCTTCAGCTTTGACGACCTGTTACAGGATGGCGAGCATGAAGGGCTGCACGAGGACGGCGC CAGTGCGCACCTTGAGCCATCGCGAGACCTGGAAGACGAGCGCTTTCAGGCCGCGTTGGCCGAGGCGATTGCGAACTTGCCCGAACGTGAGCGATTGGTG TTGGCGCTGTACTACGACGAAGAGCTCAACCTCAAGGAAATCGGTGAGGTGCTGGGCGTCAGTGAGTCGCGCGTCAGTCAGTTGCACAGCCAGTGCGCCG CGCGGTTACGCGGGCGACTGGCCGAGTGGCGAGCGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTCTGTAGCAGCTTAATTACTGTAGGAGCGAGCGTGCGCGTGATGCGGGCGATGGGTGTTGAGGGATACACCGCATCGTTTTTATCGCGCGCACGCTCG CTCCTACAGGTTCATGGCGTGTAACACAAACCGAATTGATTGAATGGCGCGTTCAGGTGCTGAGCGCGTTTTAAGACTGCTTGGAGGTCGAATTGGACAA GAATATGAAAATCCTCATCGTTGATGATTTTTCAACGATGCGGCGGATCATTAAAAACCTGCTGCGTGACTTAGGGTTCACTAACACCGTGGAAGCCGAT GACGGCATCACGGCGATTCCGATCCTGAACACCGGCAGCATCGACTTTCTGGTCACTGACTGGAACATGCCGGGCATGACGGGCATCGACCTGTTGCGCC ACGTGCGCGCGGACGAAAAGCTTAGAAGCCTGCCTGTGTTGATGGTGACCGCAGAAGCCAAGCGCGAGCAAATCATCGAAGCCGCCCAGGCGGGGGTTAA
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| Amino Acid Sequence |
>flagellar biosynthesis sigma factor
MTASGYRMYSKSSRDSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRN TRMVSDAIRAIEAKTGCDAKDHEVAAELNLSLDDYYAILNDTLGSRLFSFDDLLQDGEHEGLHEDGASAHLEPSRDLEDERFQAALAEAIANLPERERLV LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLAEWRAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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